View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17624_high_8 (Length: 327)
Name: NF17624_high_8
Description: NF17624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17624_high_8 |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 23 - 323
Target Start/End: Original strand, 13473341 - 13473641
Alignment:
| Q |
23 |
atcatctctaacatgatcataaccaaatgcatgaagactaaatgcattagtgacattagatagacactcattaaggctagggtaaacgaccttaatttcc |
122 |
Q |
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| T |
13473341 |
atcatctctaacatgatcataaccaaatgcatgaagactaaatgcattagtgacattagatagacactcgttaaggctaggagaaacgaccttaatttcc |
13473440 |
T |
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| Q |
123 |
ttagtagccgggttccataatactacatttctatgatcgagacaattatagaaacaaataatgccattaatagcagaacctaaaatatgaggaagaaaat |
222 |
Q |
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| T |
13473441 |
ttagtagccgggttccataatactacatttctatgatcgagacaattatagaaacaaataatgccattaatagcagaacctaaaatatgaagaagaaaat |
13473540 |
T |
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| Q |
223 |
tatcacttggtagatgatcatatggcggtggtggatctaatctaaccttattctcaaacctctcacctgaaagcatatacaacatactcggaaccaaaaa |
322 |
Q |
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| T |
13473541 |
tgtcacttggtagatgatcatatggcggtggtggatctaatctaaccttattctcaaacctctcacctgaaagcatatacaacatactcgaaaccaaaaa |
13473640 |
T |
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| Q |
323 |
c |
323 |
Q |
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| T |
13473641 |
c |
13473641 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 27735999 - 27736033
Alignment:
| Q |
23 |
atcatctctaacatgatcataaccaaatgcatgaa |
57 |
Q |
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| T |
27735999 |
atcatctctaacatgatcataaccaaatccatgaa |
27736033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 9801 - 9764
Alignment:
| Q |
270 |
ttattctcaaacctctcacctgaaagcatatacaacat |
307 |
Q |
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| T |
9801 |
ttattctcaaacctctcaccagaaagcaaatacaacat |
9764 |
T |
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