View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17625_high_1 (Length: 992)

Name: NF17625_high_1
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17625_high_1
NF17625_high_1
[»] chr4 (1 HSPs)
chr4 (121-976)||(56442136-56442989)


Alignment Details
Target: chr4 (Bit Score: 761; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 761; E-Value: 0
Query Start/End: Original strand, 121 - 976
Target Start/End: Complemental strand, 56442989 - 56442136
Alignment:
Q  121 tgaagtatgcaatgcatgaatccaatccaatccaatccaagtaaatctgcaacgtggcaaggagtgaggggtgatggcagcagcagcgataggagtgaga 220  Q
    |||||||||||||||||||||||||||||||||||     |||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||     
T  56442989 tgaagtatgcaatgcatgaatccaatccaatccaa-----gtaaatttgcaacgtggcaaagagtgaggggtgatggcagcagtagcgataggagtgagg 56442895  T
Q  221 tgctgctgctcattgtcgtttccgtctcatcgcaaatcttcatcttcttcatgttctgattattattacagaaaaagaagtagtagaatcaacgcttctt 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  56442894 tgctgctgctcattgtcgtttccgtctcatcgcaaatcttcatcttcttcatgctctgattattattacagaagaagaagtagtagaatcaacgcttctt 56442795  T
Q  321 cattgttctggggatcttctaaggacaacaacaaacataataacatttcttcttcttcttc---atcgcatcagcaacaattcagcttcaatgtgaccac 417  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||||||| |||||    
T  56442794 cattgttctggggatcttctaaggacaacaacaaacagaataacatttcttcttcttcttcttcatcgcatcagcaacaattcagcttcaatgttaccac 56442695  T
Q  418 cacaacagaatctgaagaagataaagataagattattactgtttcttttgtatcttcaatttcagatattccatccacccaatgggatgcatgtgctctt 517  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56442694 cacaacagaatctgaagaagataaagataaaattattactgtttcttttgtatcttcaatttcagatattccatccacccaatgggatgcatgtgctctt 56442595  T
Q  518 gatgctacaggaggaccagacaaattcaatccatttctctcacacgcatttctatcctctctagaactatcatcttcttctgttaaggaaaagggatgga 617  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56442594 gatgctactggaggaccagacaagttcaatccatttctctcacacgcttttctatcctctctagaactatcatcttcttctgttaaggaaaagggatgga 56442495  T
Q  618 ccccacaccacatcatcgctaaggatattcataatcatattctcgctgttgttcctctctatctcaagacccattcttatggtgaattcgtttttgatca 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56442494 ccccacaccacatcatcgctaaggatattcataatcatattctcgctgttgttcctctctatctcaagacccattcttatggtgaattcgtttttgatca 56442395  T
Q  718 ttcttgggccaatgcttactctcatttttatggttccaattcttattatcctaagttacaatcctgtgtccccttcacccctgtcaccggtccaaggatc 817  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56442394 ttcttgggccaatgcttactctcatttttatggttccaattcttattatcctaagttacaatcctgtgtccccttcacccctgtcaccggtccaaggatc 56442295  T
Q  818 ttacttcgtaacacttctttcaaacatcatgtttttgacttcattgtttctgctatcaaggatctcactgccatgtctcaactttcatccttccatgtca 917  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56442294 ttacttcgtaacacttctttcaaacatcatatttttgacttcattgtttctgctatcaaggatctcactgccatgtctcaactttcatccttccatgtca 56442195  T
Q  918 cttttcccactgaaagcgagtggcacaaattcacccagcaaggtttcctccctaggatt 976  Q
    |||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||    
T  56442194 cttttccctctgaaagcgagtggcacaaattcactcaacaaggtttcctccctaggatt 56442136  T

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