View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_high_10 (Length: 457)
Name: NF17625_high_10
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 13 - 441
Target Start/End: Complemental strand, 13394309 - 13393881
Alignment:
| Q |
13 |
aatatcgtaatatttttatggtaaaaaagattatgtgcacttgcaggggtgacgcaaaggatgcaatattggatcctaatgtcaaaaatctttttcaaag |
112 |
Q |
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| T |
13394309 |
aatattgtaatatttttatggtaaaaaagattatgtgcacttgcaggggtgacgcaaaggatgcaatattggatcctaatgtcaaaaatctttttcaaag |
13394210 |
T |
|
| Q |
113 |
tatcaatgggacatcattttatcaatacaccaagacaaacaaagaattgaatgatgtttttaacaaagcaatgggacaatctggaccattagaaattaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13394209 |
tatcaatgggacatcattttatcaatacaccaagacaaacaaagaattgaatgatgtttttaacaaagcaatgggacaatctggaccattagaaattaaa |
13394110 |
T |
|
| Q |
213 |
aggatcctcaaattatataaaggttttgaaggaatctcaactttggttgatgttggaggtggagtaggagaaaccctaaaactcattctctctcaatatc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13394109 |
aggatcctcaaattatataaaggttttgaaggaatctcaacattggttgatgttggaggtggagtaggagaaaccctaaaactcattctctctcaatatc |
13394010 |
T |
|
| Q |
313 |
cttcaattaagggagttaattttgacttaccacaagctgttcaagatgcacctactcttccaggtaaaatttatcaatcaatctatttttgtacatttaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13394009 |
cttcaattaagggagttaattttgacttaccacaagctgttcaagatgcacctactcttccaggtaaaatttatcaatcaatctatttttgtacatttaa |
13393910 |
T |
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| Q |
413 |
caatattttgaaatattaaatttttaagg |
441 |
Q |
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| T |
13393909 |
caatattttgaaatattaaatttttaagg |
13393881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 41 - 391
Target Start/End: Complemental strand, 13382912 - 13382562
Alignment:
| Q |
41 |
gattatgtgcacttgcaggggtgacgcaaaggatgcaatattggatcctaatgtcaaaaatctttttcaaagtatcaatgggacatcattttatcaatac |
140 |
Q |
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|||| ||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
13382912 |
gattttgtgctcttgcaggggtgatgcaaaggatgcaattttggatcctgatgtcaaaaatattttccaaagtatcaatgggacatcattttatcaatac |
13382813 |
T |
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| Q |
141 |
accaagacaaacaaagaattgaatgatgtttttaacaaagcaatgggacaatctggaccattagaaattaaaaggatcctcaaattatataaaggttttg |
240 |
Q |
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| T |
13382812 |
accaagacaaacaaagaattgaatgatacttgtaacaaagcaatggctcattctggtccattggaaattaaaaggatccttcaattttataaaggatttg |
13382713 |
T |
|
| Q |
241 |
aaggaatctcaactttggttgatgttggaggtggagtaggagaaaccctaaaactcattctctctcaatatccttcaattaagggagttaattttgactt |
340 |
Q |
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| T |
13382712 |
aaggagtctcaacgttggttgatgttggaggtggagtaggaaagaccctaaaactcattatctctcaatatccttcaattaagggaattaattttgatat |
13382613 |
T |
|
| Q |
341 |
accacaagctgttcaagatgcacctactcttccaggtaaaatttatcaatc |
391 |
Q |
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| T |
13382612 |
gccacaagttgttcaaaatgcaccttctcatccaggtaaaatatatcaatc |
13382562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 278 - 441
Target Start/End: Complemental strand, 13391062 - 13390900
Alignment:
| Q |
278 |
aggagaaaccctaaaactcattctctctcaatatccttcaattaagggagttaattttgacttaccacaagctgttcaagatgcacctactcttccaggt |
377 |
Q |
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|||||| || |||||||||||| ||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
13391062 |
aggagagacgctaaaactcattatctctcaatatccttcaatcaacggagtaaattttgactt-ccacaagctgttcaagatgcacctactcatccaggt |
13390964 |
T |
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| Q |
378 |
aaaatttatcaatcaatctatttttgtacatttaacaatattttgaaatattaaatttttaagg |
441 |
Q |
| |
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| T |
13390963 |
aaaatatatcaatctgtctatttttgtacattctacaatattttaaaatatgaaatttttaagg |
13390900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 169 - 379
Target Start/End: Complemental strand, 13407111 - 13406901
Alignment:
| Q |
169 |
tttttaacaaagcaatgggacaatctggaccattagaaattaaaaggatcctcaaattatataaaggttttgaaggaatctcaactttggttgatgttgg |
268 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||||| |||||||| || | | |||||||||| ||||| | | ||||||| |||||||||| || |
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| T |
13407111 |
tttttaacaaagcaatggctcaatctggtccattagaaatgaaaaggattcttacactatataaaggatttgaggaagtctcaacactggttgatgtagg |
13407012 |
T |
|
| Q |
269 |
aggtggagtaggagaaaccctaaaactcattctctctcaatatccttcaattaagggagttaattttgacttaccacaagctgttcaagatgcacctact |
368 |
Q |
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||||||||||| | | | |||| ||| | ||| ||||||||||||| || || |||||||||| ||||| |||| |||||||||||||| ||| |
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| T |
13407011 |
tggtggagtagggaatgctttgaaacagattatatctgaatatccttcaataaaaggcattaattttgatttaccccaagtggttcaagatgcaccaact |
13406912 |
T |
|
| Q |
369 |
cttccaggtaa |
379 |
Q |
| |
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| T |
13406911 |
catccaggtaa |
13406901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 379
Target Start/End: Original strand, 19174607 - 19174783
Alignment:
| Q |
203 |
agaaattaaaaggatcctcaaattatataaaggttttgaaggaatctcaactttggttgatgttggaggtggagtaggagaaaccctaaaactcattctc |
302 |
Q |
| |
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|||||| |||||||| || | ||||||||||| ||||| ||| ||||||| |||||||||| || ||||||||||| | | | |||| ||| | |
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| T |
19174607 |
agaaatgaaaaggattcttacgttatataaaggatttgagggagtctcaacactggttgatgtaggtggtggagtagggaatgctttgaaacagattata |
19174706 |
T |
|
| Q |
303 |
tctcaatatccttcaattaagggagttaattttgacttaccacaagctgttcaagatgcacctactcttccaggtaa |
379 |
Q |
| |
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||| ||||||||||||| || || |||||||||| ||||| |||| |||||||||||||| |||| ||||||||| |
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| T |
19174707 |
tctgaatatccttcaataaaaggcattaattttgatttacctcaagtggttcaagatgcaccaactcatccaggtaa |
19174783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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