View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_high_13 (Length: 422)
Name: NF17625_high_13
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 15 - 404
Target Start/End: Original strand, 36550383 - 36550772
Alignment:
| Q |
15 |
accaacaagaaccatctcctttgtaattgcgtttgcatactgcgctacattatcttcttttgtctccgtcgaggctccttgatcatgaacagtcatcttt |
114 |
Q |
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| T |
36550383 |
accaacaagaaccatctcctttgtaattgcgtttgcatactgcgctacattatcttcttttgtctccgtcgaggctccttgatcatgaacagtcatcttt |
36550482 |
T |
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| Q |
115 |
gatgaatatgatattgaagacgaggatgaacatggtgacaccaaccccggcaagtgatcaactgacgatgatttcgattcctctggtgatggatgcctca |
214 |
Q |
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| T |
36550483 |
gatgaatttgatattgaagacgaggatgaacatggtgacaccaaccccggcaagtgatcaactgacgatgatttcgattcctctggtgatggatgcctca |
36550582 |
T |
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| Q |
215 |
attccaaccctcgactctttcttttgctcattgtgtgtagatgtcaagttaacccttaattttcaagcaaaataattgttactctaaaaatgtagatcta |
314 |
Q |
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| T |
36550583 |
attccaaccctcgactctttcttttgctcattgtgtgtagatgtcaagttaacccttaattttcaagcaaaataattgttactctaaaaatgtagatcta |
36550682 |
T |
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| Q |
315 |
attgtaagaagaagaaaagacaagatgaatacaatggcactcgtgtagtttggttggttatatatccctcatccaatgaatcaatgacat |
404 |
Q |
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| T |
36550683 |
attataagaagaagaaaagacaagatgaatacaatggcactcgtgtagtttggttggttatatatccctcatccaatgaatcaatgacat |
36550772 |
T |
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