View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17625_high_14 (Length: 421)

Name: NF17625_high_14
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17625_high_14
NF17625_high_14
[»] chr1 (4 HSPs)
chr1 (36-182)||(10354898-10355043)
chr1 (247-414)||(10355108-10355272)
chr1 (80-158)||(10350578-10350655)
chr1 (247-303)||(31042970-31043026)
[»] chr2 (3 HSPs)
chr2 (247-303)||(25622503-25622559)
chr2 (247-302)||(29685785-29685840)
chr2 (247-279)||(39647854-39647886)
[»] chr8 (2 HSPs)
chr8 (248-302)||(37007388-37007442)
chr8 (249-302)||(39932760-39932813)
[»] chr3 (1 HSPs)
chr3 (247-303)||(29611989-29612045)
[»] chr6 (1 HSPs)
chr6 (264-301)||(9762774-9762811)
[»] chr7 (1 HSPs)
chr7 (247-302)||(44452123-44452176)
[»] chr4 (2 HSPs)
chr4 (247-303)||(37461553-37461609)
chr4 (247-303)||(52650771-52650827)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 36 - 182
Target Start/End: Original strand, 10354898 - 10355043
Alignment:
Q  36 cgttggaaacaacaaattaatattttcactttgctcacatcaattgaaaactatatgtgcatatttgttttcattatgagcattacaaaatcaagtaaac 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10354898 cgttggaaacaacaaattaatattttcactttgctcacatcaattgaaaactatatgtgcatatttgttttcatta-gagcattacaaaatcaagtaaac 10354996  T
Q  136 aagcatggacaactttatctgtatattgcctccgactttaaatggta 182  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  10354997 aagcatggacaactttatctgtatattgcctccaactttaaatggta 10355043  T

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Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 247 - 414
Target Start/End: Original strand, 10355108 - 10355272
Alignment:
Q  247 taattactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagacctataaaataatatggttaatcctcgtatatgtagtttaagaga 346  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||  |||||||||||||||||    
T  10355108 taattactttatttagaatacttaaagagtgtttcgggagcattcgttaacaagacccataaa-taatatggttaattctc--atatgtagtttaagaga 10355204  T
Q  347 aaaataaaagaaaattttgtggcaatattatatttcactaaatcaagacctcacttcaaagaataatc 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10355205 aaaataaaagaaaattttgtggcaatattatatttcactaaatcaagacctcacttcaaaaaataatc 10355272  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 10350578 - 10350655
Alignment:
Q  80 tgaaaactatatgtgcatatttgttttcattatgagcattacaaaatcaagtaaacaagcatggacaactttatctgta 158  Q
    |||||||||||| ||||||||||||||||||| ||| | | |||||| || |||||||||||| |||||||||||||||    
T  10350578 tgaaaactatatttgcatatttgttttcatta-gaggagtgcaaaattaattaaacaagcatgcacaactttatctgta 10350655  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 31043026 - 31042970
Alignment:
Q  247 taattactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagacc 303  Q
    ||||||||| |||||||||| ||||||| |||  ||||  |||||||||||||||||    
T  31043026 taattacttaatttagaatgcttaaagactgtgccggggacattcgttaacaagacc 31042970  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 25622559 - 25622503
Alignment:
Q  247 taattactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagacc 303  Q
    ||||||||| |||||||||||||||||||||  ||||||||| ||||||||||||||    
T  25622559 taattacttaatttagaatgtttaaagagtgcatcgggagcactcgttaacaagacc 25622503  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 29685785 - 29685840
Alignment:
Q  247 taattactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagac 302  Q
    |||||||||||||||| |||||||||||||| | |||  ||| |||||||||||||    
T  29685785 taattactttatttagcatgtttaaagagtgctccggaggcactcgttaacaagac 29685840  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 39647854 - 39647886
Alignment:
Q  247 taattactttatttagaatgtttaaagagtgtt 279  Q
    ||||||||| |||||||||||||||||||||||    
T  39647854 taattacttaatttagaatgtttaaagagtgtt 39647886  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 37007442 - 37007388
Alignment:
Q  248 aattactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagac 302  Q
    |||||||| |||||||||||||||||| || |||||||||| ||| |||||||||    
T  37007442 aattacttaatttagaatgtttaaagaatgcttcgggagcactcgataacaagac 37007388  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 39932760 - 39932813
Alignment:
Q  249 attactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagac 302  Q
    |||||||  ||||||||||||||||||||||||||  | |||||||||||||||    
T  39932760 attacttcttttagaatgtttaaagagtgtttcggaggaattcgttaacaagac 39932813  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 29612045 - 29611989
Alignment:
Q  247 taattactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagacc 303  Q
    |||||||||  |||||||||||||||||||||  |||| ||| ||||||||||||||    
T  29612045 taattacttattttagaatgtttaaagagtgtcccgggggcactcgttaacaagacc 29611989  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 301
Target Start/End: Complemental strand, 9762811 - 9762774
Alignment:
Q  264 atgtttaaagagtgtttcgggagcattcgttaacaaga 301  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  9762811 atgtttaaagagtgtttcgggggcactcgttaacaaga 9762774  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 44452123 - 44452176
Alignment:
Q  247 taattactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagac 302  Q
    ||||||||| |||||||||||||||||||||  || || ||| |||||||||||||    
T  44452123 taattacttaatttagaatgtttaaagagtg--tctggggcactcgttaacaagac 44452176  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 37461553 - 37461609
Alignment:
Q  247 taattactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagacc 303  Q
    ||||||||| |||||| ||||||||||||||  ||||   |||||||||||||||||    
T  37461553 taattacttaatttagcatgtttaaagagtgcctcggattcattcgttaacaagacc 37461609  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 52650771 - 52650827
Alignment:
Q  247 taattactttatttagaatgtttaaagagtgtttcgggagcattcgttaacaagacc 303  Q
    ||||| ||| |||||| |||||||||||||||| |||  ||| ||||||||||||||    
T  52650771 taatttcttaatttagcatgtttaaagagtgttccggaggcactcgttaacaagacc 52650827  T

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