View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_high_16 (Length: 393)
Name: NF17625_high_16
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 3018662 - 3018818
Alignment:
| Q |
1 |
aaactaaaccaaacaactaaagaaacaaacccagatatctcaaaactttttcccttgctacaaactaaaagcattaatgatctcaataatactactaatt |
100 |
Q |
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| T |
3018662 |
aaactaaaccaaacaactaaagaaacaaacccagatatctcaaaactttttcccttgctacaaactaaaagcattaatgatctcaataatactactaatt |
3018761 |
T |
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| Q |
101 |
tgtaatattctaccttaaaaatatgcaaactttcaccaaataaaccaattcatctcc |
157 |
Q |
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| T |
3018762 |
tgtaatattctaccttaaaaatatgcaaactttcaccaaataaaccaattcatctcc |
3018818 |
T |
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Target: chr2; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 257 - 352
Target Start/End: Original strand, 3018916 - 3019011
Alignment:
| Q |
257 |
tgtatttacaaacataccctcactcaatcatgtacctagtacccatcttggccaaccttgcaatccattccaccattttggttttctcttcaaaat |
352 |
Q |
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| T |
3018916 |
tgtatttacaaacataccctcactcaatcatgtacctagtacccatcttggccaaccttgcaatccattccaccattttggttttctcttcaaaat |
3019011 |
T |
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