View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17625_high_22 (Length: 362)

Name: NF17625_high_22
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17625_high_22
NF17625_high_22
[»] chr6 (2 HSPs)
chr6 (32-354)||(11274270-11274590)
chr6 (286-350)||(12174286-12174350)
[»] chr3 (6 HSPs)
chr3 (18-286)||(17712288-17712546)
chr3 (18-286)||(19013545-19013803)
chr3 (278-354)||(17713234-17713310)
chr3 (278-354)||(19014463-19014539)
chr3 (315-349)||(33510197-33510231)
chr3 (317-350)||(27541167-27541200)
[»] chr8 (7 HSPs)
chr8 (123-354)||(12181626-12181857)
chr8 (123-354)||(12426054-12426285)
chr8 (17-139)||(12181492-12181613)
chr8 (17-139)||(12425920-12426041)
chr8 (298-354)||(13580453-13580509)
chr8 (298-354)||(32646672-32646728)
chr8 (298-342)||(38075793-38075836)
[»] chr1 (2 HSPs)
chr1 (284-354)||(35204310-35204380)
chr1 (321-350)||(29664192-29664221)
[»] chr7 (4 HSPs)
chr7 (318-354)||(26914438-26914474)
chr7 (318-354)||(31329682-31329718)
chr7 (300-350)||(35812594-35812644)
chr7 (317-347)||(36066110-36066140)
[»] chr5 (2 HSPs)
chr5 (318-354)||(3597007-3597043)
chr5 (317-353)||(32257781-32257817)
[»] chr4 (1 HSPs)
chr4 (317-350)||(12167047-12167080)
[»] chr2 (1 HSPs)
chr2 (317-350)||(5163789-5163822)


Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 32 - 354
Target Start/End: Original strand, 11274270 - 11274590
Alignment:
Q  32 tgtgtaatttttattaataatcaaagttgaagagcttgacaaaagaaagcgatcatttaatttatcaactagatgtgaacatttttaatgttattagagt 131  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11274270 tgtgtaattttcattaataatcaaagttgaagagtttgacaaaagaaagcgatcatttaatttatcaactagatgtgaacatttttaatgttattagagt 11274369  T
Q  132 ttttctttaacaacaaaagaatcaatacctttaaaaaatgaagaatcaatatattcacgactaaattcacatgcaaggatgaagcacatgtgagtagtcc 231  Q
    || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11274370 ttgtctttaacaacaaaagaatcaatacctttaaaa-atgaagaatcaatatattcacgactaaattcacatgcaaggatgaagcacatgtgagtagtcc 11274468  T
Q  232 gcatctagtatattatatgattttggcagggtcgacctaagtatgattgagagagcagtaacttaagacaccattttcttaaagacatcaaaattattat 331  Q
    |||||||||||||||||||||| | ||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  11274469 gcatctagtatattatatgattgtcgcagggtcgccctaagtatgattgagtgagcagcaacttaagacaccattttcttaaagacatcaaaattattat 11274568  T
Q  332 ttttacttagtaattagtattat 354  Q
    |||||||| ||||||||| ||||    
T  11274569 ttttactt-gtaattagtgttat 11274590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 12174286 - 12174350
Alignment:
Q  286 gcagtaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagta 350  Q
    |||||||| || | ||||||||| | | || || |||||||||||||||||||||||| ||||||    
T  12174286 gcagtaacctagggcaccattttttaagaggcaccaaaattattatttttacttagtagttagta 12174350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 17712288 - 17712546
Alignment:
Q  18 atatatgtgtagtgtgtgtaatttttattaataatcaaagttgaagagcttgacaaaagaaagcgatcatttaatttatcaactagatgtgaacattttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||    
T  17712288 atatatgtgtagtgtgtgtaatttttattaataatcaaagttgaagagcttgac----------gatcatttaatttatcaactagatgtgaacattttt 17712377  T
Q  118 aatgttattagagtttttctttaacaacaaaagaatcaatacctttaaaaaatgaagaatcaatatattcacgactaaattcacatgcaaggatgaagca 217  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  17712378 aatgttattagagtttttctataacaacaaaagaatcaatacctttaaaaaatgaagaatcaatatattcacgactaaattcacatgcaaggatgaagga 17712477  T
Q  218 catgtgagtagtccgcatctagtatattatatgattttggcagggtcgacctaagtatgattgagagag 286  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17712478 catgtgagcagtccgcatctagtatattatatgattttggcagggtcgccctaagtatgattgagagag 17712546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 19013545 - 19013803
Alignment:
Q  18 atatatgtgtagtgtgtgtaatttttattaataatcaaagttgaagagcttgacaaaagaaagcgatcatttaatttatcaactagatgtgaacattttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||    
T  19013545 atatatgtgtagtgtgtgtaatttttattaataatcaaagttgaagagcttgac----------gatcatttaatttatcaactagatgtgaacattttt 19013634  T
Q  118 aatgttattagagtttttctttaacaacaaaagaatcaatacctttaaaaaatgaagaatcaatatattcacgactaaattcacatgcaaggatgaagca 217  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  19013635 aatgttattagagtttttctataacaacaaaagaatcaatacctttaaaaaatgaagaatcaatatattcacgactaaattcacatgcaaggatgaagga 19013734  T
Q  218 catgtgagtagtccgcatctagtatattatatgattttggcagggtcgacctaagtatgattgagagag 286  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19013735 catgtgagcagtccgcatctagtatattatatgattttggcagggtcgccctaagtatgattgagagag 19013803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 17713234 - 17713310
Alignment:
Q  278 ttgagagagcagtaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 354  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17713234 ttgagagagcagcaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagttttat 17713310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 19014463 - 19014539
Alignment:
Q  278 ttgagagagcagtaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 354  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19014463 ttgagagagcagcaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagttttat 19014539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 349
Target Start/End: Complemental strand, 33510231 - 33510197
Alignment:
Q  315 gacatcaaaattattatttttacttagtaattagt 349  Q
    ||||||||||||||||||||||||||||| |||||    
T  33510231 gacatcaaaattattatttttacttagtagttagt 33510197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 350
Target Start/End: Complemental strand, 27541200 - 27541167
Alignment:
Q  317 catcaaaattattatttttacttagtaattagta 350  Q
    |||||||||||||||||||| |||||||||||||    
T  27541200 catcaaaattattatttttatttagtaattagta 27541167  T

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Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 123 - 354
Target Start/End: Original strand, 12181626 - 12181857
Alignment:
Q  123 tattagagtttttctttaacaacaaaagaatcaatacctttaaaaaatgaagaatcaatatattcacgactaaattcacatgcaaggatgaagcacatgt 222  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  12181626 tattagagtttttctttaacaacaaaagaatcaatatctttaaaaaatgaagaataaatatattcacgactaagttcacatgcaaggatgaagcacatgt 12181725  T
Q  223 gagtagtccgcatctagtatattatatgattttggcagggtcgacctaagtatgattgagagagcagtaacttaagacaccattttcttaaagacatcaa 322  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |||||||||||||||||| |||||||||| ||    
T  12181726 gagtagtccgcatctagtatattatatgattttggcagggtcgccctaagtatggttgggagagcagcaacttaagacaccattttattaaagacattaa 12181825  T
Q  323 aattattatttttacttagtaattagtattat 354  Q
    ||||||||||||||||||||||||||||||||    
T  12181826 aattattatttttacttagtaattagtattat 12181857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 123 - 354
Target Start/End: Original strand, 12426054 - 12426285
Alignment:
Q  123 tattagagtttttctttaacaacaaaagaatcaatacctttaaaaaatgaagaatcaatatattcacgactaaattcacatgcaaggatgaagcacatgt 222  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  12426054 tattagagtttttctttaacaacaaaagaatcaatatctttaaaaaatgaagaataaatatattcacgactaagttcacatgcaaggatgaagcacatgt 12426153  T
Q  223 gagtagtccgcatctagtatattatatgattttggcagggtcgacctaagtatgattgagagagcagtaacttaagacaccattttcttaaagacatcaa 322  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |||||||||||||||||| |||||||||| ||    
T  12426154 gagtagtccgcatctagtatattatatgattttggcagggtcgccctaagtatggttgggagagcagcaacttaagacaccattttattaaagacattaa 12426253  T
Q  323 aattattatttttacttagtaattagtattat 354  Q
    ||||||||||||||||||||||||||||||||    
T  12426254 aattattatttttacttagtaattagtattat 12426285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 12181492 - 12181613
Alignment:
Q  17 aatatatgtgtagtgtgtgtaatttttattaataatcaaagttgaagagcttgacaaaagaaagcgatcatttaatttatcaactagatgtgaacatttt 116  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12181492 aatatatgtgtagt-tgtgtaatttttattagtaatcaaagttgaagagcttgacaaaagaaagcgatcatttaatttatcaactagatgagaacatttt 12181590  T
Q  117 taatgttattagagtttttcttt 139  Q
    |||||||||||||||||||||||    
T  12181591 taatgttattagagtttttcttt 12181613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 12425920 - 12426041
Alignment:
Q  17 aatatatgtgtagtgtgtgtaatttttattaataatcaaagttgaagagcttgacaaaagaaagcgatcatttaatttatcaactagatgtgaacatttt 116  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12425920 aatatatgtgtagt-tgtgtaatttttattagtaatcaaagttgaagagcttgacaaaagaaagcgatcatttaatttatcaactagatgagaacatttt 12426018  T
Q  117 taatgttattagagtttttcttt 139  Q
    |||||||||||||||||||||||    
T  12426019 taatgttattagagtttttcttt 12426041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 13580509 - 13580453
Alignment:
Q  298 gacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 354  Q
    ||||||||||| |||  | || ||||||||||||||||||||| || ||||||||||    
T  13580509 gacaccatttttttaggggcaccaaaattattatttttacttaatagttagtattat 13580453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 32646728 - 32646672
Alignment:
Q  298 gacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 354  Q
    ||||||||||| |||||||||  |||||||||||||||| | |||| | ||||||||    
T  32646728 gacaccatttttttaaagacactaaaattattatttttattcagtagtgagtattat 32646672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 38075836 - 38075793
Alignment:
Q  298 gacaccattttcttaaagacatcaaaattattatttttacttagt 342  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||    
T  38075836 gacaccatttt-ttagggacatcaaaattattatttttacttagt 38075793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 284 - 354
Target Start/End: Complemental strand, 35204380 - 35204310
Alignment:
Q  284 gagcagtaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 354  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35204380 gagcagcaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 35204310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 350
Target Start/End: Original strand, 29664192 - 29664221
Alignment:
Q  321 aaaattattatttttacttagtaattagta 350  Q
    ||||||||||||||||||||||||||||||    
T  29664192 aaaattattatttttacttagtaattagta 29664221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 26914474 - 26914438
Alignment:
Q  318 atcaaaattattatttttacttagtaattagtattat 354  Q
    |||||||||||||||||||||||||| ||||||||||    
T  26914474 atcaaaattattatttttacttagtagttagtattat 26914438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 31329718 - 31329682
Alignment:
Q  318 atcaaaattattatttttacttagtaattagtattat 354  Q
    |||||||||||||||||||||| ||||||||||||||    
T  31329718 atcaaaattattatttttacttcgtaattagtattat 31329682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 35812594 - 35812644
Alignment:
Q  300 caccattttcttaaagacatcaaaattattatttttacttagtaattagta 350  Q
    ||||||||| |||  | |||||||||||||||||||||||| |||||||||    
T  35812594 caccatttttttaggggcatcaaaattattatttttacttaataattagta 35812644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 347
Target Start/End: Original strand, 36066110 - 36066140
Alignment:
Q  317 catcaaaattattatttttacttagtaatta 347  Q
    |||||||||||||||||||||||||||||||    
T  36066110 catcaaaattattatttttacttagtaatta 36066140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 3597043 - 3597007
Alignment:
Q  318 atcaaaattattatttttacttagtaattagtattat 354  Q
    ||||||||||||||||||| |||||||||||||||||    
T  3597043 atcaaaattattatttttatttagtaattagtattat 3597007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 32257817 - 32257781
Alignment:
Q  317 catcaaaattattatttttacttagtaattagtatta 353  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  32257817 catcaaaataattatttttacttagtagttagtatta 32257781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 350
Target Start/End: Original strand, 12167047 - 12167080
Alignment:
Q  317 catcaaaattattatttttacttagtaattagta 350  Q
    ||||||||||||||||||| ||||||||||||||    
T  12167047 catcaaaattattatttttgcttagtaattagta 12167080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 350
Target Start/End: Original strand, 5163789 - 5163822
Alignment:
Q  317 catcaaaattattatttttacttagtaattagta 350  Q
    ||||||||||||||||||||||||||| ||||||    
T  5163789 catcaaaattattatttttacttagtagttagta 5163822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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