View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17625_high_24 (Length: 358)

Name: NF17625_high_24
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17625_high_24
NF17625_high_24
[»] scaffold0045 (6 HSPs)
scaffold0045 (1-343)||(52477-52817)
scaffold0045 (184-340)||(35096-35252)
scaffold0045 (185-340)||(27741-27896)
scaffold0045 (258-340)||(43614-43696)
scaffold0045 (1-90)||(34901-34990)
scaffold0045 (1-90)||(27353-27442)


Alignment Details
Target: scaffold0045 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 52477 - 52817
Alignment:
Q  1 tgtaattctcctccttcgttatcttcatacaaacccagaaaattttaaggatcccatgtgttttgatcctgaaagatggaacgtacgtatatacgatggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |    
T  52477 tgtaattctcctccttcgttatcttcatacaaacccagaaaattttaaggatcccatatgttttgatcctgaaagatggaacgtacgtatatacgataac 52576  T
Q  101 tcttaattagggtttcaatattttttaagctagtcaatgnnnnnnnnncttccctaaattgacaataatgtgacgatatatgcgtatataaattcttagg 200  Q
    |||||||||||||||| ||||||||||||||||||||||          || ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  52577 tcttaattagggtttcgatattttttaagctagtcaatgttttttt---tttcctaaattgacaataatgtaacgatatatgtgtatataaattcttagg 52673  T
Q  201 agccagcaaagcctggaacataccaagtttttggagctgga-cagagattatgccctggaaacatgcttgcaagaattcaactagcacttttgcttcatc 299  Q
    ||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52674 agccagcaaagcctggaacataccaagtttttggagctggggcagtgattatgccctggaaacatgcttgcaagaattcaactagcacttttgcttcatc 52773  T
Q  300 atttgtccataggatacaagtaatgtttgatcctagtatttcat 343  Q
    |||| |||||| ||||||||||||||||||||||||||||||||    
T  52774 atttatccatacgatacaagtaatgtttgatcctagtatttcat 52817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 184 - 340
Target Start/End: Original strand, 35096 - 35252
Alignment:
Q  184 gtatataaattcttaggagccagcaaagcctggaacataccaagtttttggagctggacagagattatgccctggaaacatgcttgcaagaattcaacta 283  Q
    ||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  35096 gtataaaaattcttaggagccagcaatgtctggaacataccaagtttttggagctggacagagattatgccctggaaacatgcttgcgagaattcaactt 35195  T
Q  284 gcacttttgcttcatcatttgtccataggatacaagtaatgtttgatcctagtattt 340  Q
    |||||| | ||||||||||||||||||||||||||||||||||  ||| ||||||||    
T  35196 gcacttctacttcatcatttgtccataggatacaagtaatgttctatcatagtattt 35252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 185 - 340
Target Start/End: Original strand, 27741 - 27896
Alignment:
Q  185 tatataaattcttaggagccagcaaagcctggaacataccaagtttttggagctggacagagattatgccctggaaacatgcttgcaagaattcaactag 284  Q
    ||||||||||||||||| ||||||||||||||||||||||||  |||||| | |||||| ||| |||||||||||||||  ||||||||||||||||| |    
T  27741 tatataaattcttaggaaccagcaaagcctggaacataccaaccttttggcggtggacaaagactatgccctggaaacacacttgcaagaattcaacttg 27840  T
Q  285 cacttttgcttcatcatttgtccataggatacaagtaatgtttgatcctagtattt 340  Q
    ||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27841 cacttctacttcatcatttgtccataggatacaagtaatgtttgatcatagtattt 27896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 43614 - 43696
Alignment:
Q  258 gaaacatgcttgcaagaattcaactagcacttttgcttcatcatttgtccataggatacaagtaatgtttgatcctagtattt 340  Q
    ||||||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||| |||||| ||||||||    
T  43614 gaaacatgcttgctagaattcaacttgcacttctgcttcatcatttgtcgataggatacaagtaatgcttgatcatagtattt 43696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 34901 - 34990
Alignment:
Q  1 tgtaattctcctccttcgttatcttcatacaaacccagaaaattttaaggatcccatgtgttttgatcctgaaagatggaacgtacgtat 90  Q
    ||||||| || | |||||||||||||||||| ||||||| ||||||||||||||||||| |||  | ||||| |||||||||||||||||    
T  34901 tgtaattgtcttgcttcgttatcttcatacagacccagagaattttaaggatcccatgtatttcaaccctgatagatggaacgtacgtat 34990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 27353 - 27442
Alignment:
Q  1 tgtaattctcctccttcgttatcttcatacaaacccagaaaattttaaggatcccatgtgttttgatcctgaaagatggaacgtacgtat 90  Q
    ||||||||||||||||||||||||||||||| |  || | ||||||||||||||||||  |||  ||||||| |||||||| ||||||||    
T  27353 tgtaattctcctccttcgttatcttcatacagattcaaagaattttaaggatcccatgaatttcaatcctgatagatggaatgtacgtat 27442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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