View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_high_28 (Length: 340)
Name: NF17625_high_28
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 147 - 312
Target Start/End: Complemental strand, 7228367 - 7228202
Alignment:
| Q |
147 |
caatgatgtgaattcttgtgagactatttgaaaaaaccttataacaatattgtataacattgttcataatctctttttagtttattcctataagttcttc |
246 |
Q |
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| T |
7228367 |
caatgatgtgaattcttgtgagactatttgaaaaaaccttataacaatattgtataacattgttcataatctctttttagtttattcctataagttcttc |
7228268 |
T |
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| Q |
247 |
aacattgtttacaaaaagaacttgtaatatatgaatttcaacatattcctgtaagttctcttaatt |
312 |
Q |
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| T |
7228267 |
aacattgtttacaaaaagaacttgtaatatatgaatttcaacatattcctataagttctcttaatt |
7228202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 7228539 - 7228406
Alignment:
| Q |
17 |
agcacgacgggtgagaaattaaaaatttgagttctaaattcttatgggtaggtgtagttactctcttgaaattacttatactatttcaatagaaatgacc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7228539 |
agcacgacgggtgagaaattaaaaatttgagttctaaattcttatgggtaggtgtagttactctcttgaaattacttatactatttcaatagaaatgacc |
7228440 |
T |
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| Q |
117 |
aaattcacctcgccaagagacatgacatagcaat |
150 |
Q |
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| T |
7228439 |
aaattcacctcgccaagagacatgacatagcaat |
7228406 |
T |
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