View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17625_high_31 (Length: 324)
Name: NF17625_high_31
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_high_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 8525552 - 8525319
Alignment:
| Q |
13 |
tcgacattctccggccatagattccaatagaaatattaacaattatttatgttgcgatgtgttggtccaccaaggaaaaacaatcactaaatattgcttt |
112 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8525552 |
tcgacattctcgagccatagattccaatagaaatattaacaattatttatgttgcgatgtgttggtccaccaaggaaaaacaatcactaaatattgtttt |
8525453 |
T |
|
| Q |
113 |
tgaaaatattgtattttcaatttggatataaatatagatgttgcgttccttaaaatttcatcaacacttactttttaaattgattttcattcacataaac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||| ||||||||||||||||| |
|
|
| T |
8525452 |
tgaaaatattgtattttcaatttggatataaatatagacgttgtgttccttaaaatatcatccacactta------------gttttcattcacataaac |
8525365 |
T |
|
| Q |
213 |
tatttggtaacactttctacaaaatcatttattcataatggtgtgg |
258 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
8525364 |
catttggtaacactttccacaaaatcatatattcataatggtgtgg |
8525319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 25520645 - 25520744
Alignment:
| Q |
129 |
tcaatttggatataaatatagatgttgcgttccttaaaatttcatcaacacttactttttaaattgattttcattcacataaactatttggtaacacttt |
228 |
Q |
| |
|
||||||||| ||||||||| | |||| || |||| |||||||| |||||||||||| | ||| ||||||||||||||||| |||| |||||||||| |
|
|
| T |
25520645 |
tcaatttggctataaatatttacgttgtgtcccttggcatttcatccacacttacttttcta-ttgtttttcattcacataaaccatttagtaacacttt |
25520743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 42125982 - 42125917
Alignment:
| Q |
122 |
tgtattttcaatttggatataaatatagatgttgcgttccttaaaatttcatcaacacttactttt |
187 |
Q |
| |
|
|||||||||||||||| ||||||||| | |||| ||| |||| |||||||| |||||||||||| |
|
|
| T |
42125982 |
tgtattttcaatttggctataaatatttaggttgtgtttcttaccatttcatccacacttactttt |
42125917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University