View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17625_high_37 (Length: 295)

Name: NF17625_high_37
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17625_high_37
NF17625_high_37
[»] chr2 (2 HSPs)
chr2 (7-280)||(43418177-43418450)
chr2 (53-245)||(43406330-43406519)


Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 43418450 - 43418177
Alignment:
Q  7 attatttggtcatttcgttttccaggtttgcaaacaaggatcaatgcatttggataaaattttgatggacacaacaaaagttgggtttagttggcaatga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43418450 attatttggtcatttcgttttccaggtttgcaaacaaggatcaatgcatttggataaaattttgatggacacaacaaaagttgggtttagtgggcaatga 43418351  T
Q  107 tagatagctgctttcaataaaatcagtggatactttctgaagatgatgattatgagtagaagaattgatgctgccagtgccagaaaagaagaataacaca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43418350 tagatagctgctttcaataaaatcagtggatactttctgaagatgatgattatgagtagaagaattgatgctgccagtgccagaaaagaagaataacaca 43418251  T
Q  207 taaatgtcacttgttagtgagaaagcagcctcaactaactcctccatgcatgaatgcatcaattcccacaggct 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43418250 taaatgtcacttgttagtgagaaagcagcctcaactaactcctccatgcatgaatgcatcaattcccacaggct 43418177  T

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Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 53 - 245
Target Start/End: Complemental strand, 43406519 - 43406330
Alignment:
Q  53 catttggataaaattttgatggacacaacaaaagttgggtttagttggcaatgatagatagctgctttcaataaaatcagtggatactttctgaagatga 152  Q
    ||||| ||||||||||||  || || ||||||||||||| ||||| |||||| |||| ||||||||||||||||||||||||||| || | |||||||||    
T  43406519 catttagataaaattttggcggccataacaaaagttgggattagtgggcaatcatagctagctgctttcaataaaatcagtggattctatgtgaagatga 43406420  T
Q  153 tgattatgagtagaagaattgatgctgccagtgccagaaaagaagaataacacataaatgtcacttgttagtgagaaagcagcctcaactaac 245  Q
    ||||   ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| | ||||||| || |||| ||||||    
T  43406419 tgat---gagtagaagaattgatgctgccaatgcccgaaaagaagaataacacataaatgtcacttgtgaatgagaaaacaacctcgactaac 43406330  T

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