View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_high_52 (Length: 232)
Name: NF17625_high_52
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_high_52 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 31 - 214
Target Start/End: Original strand, 3754605 - 3754788
Alignment:
| Q |
31 |
ctttgaagaatgacacaaatgatgatagatggaaagggtttatctatgctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaatgtt |
130 |
Q |
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| T |
3754605 |
ctttgaagaatgacacaaatgatgatagatggaaagggtttatctattctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaatgtt |
3754704 |
T |
|
| Q |
131 |
ggaaggttttgctaatggaaactcattcagtaatctcttatggtggatccatagcagatgaggaatgttgcacaaaatcaatat |
214 |
Q |
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| T |
3754705 |
ggaaggttttgctaatggaaactcattcagtaatctcttatggtggatccatagcagatgaggaatgttgcacaaaatcaatat |
3754788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 197
Target Start/End: Complemental strand, 4045604 - 4045467
Alignment:
| Q |
60 |
tggaaagggtttatctatgctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaatgttggaaggttttgctaatggaaactcattca |
159 |
Q |
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| T |
4045604 |
tggaaagggtttacctatgctttgcaaggtgtttatgataagaagaatgcattgaagaatattagaatgttgaaaggttttgatgatggaaactctttta |
4045505 |
T |
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| Q |
160 |
gtaatctcttatggtggatccatagcagatgaggaatg |
197 |
Q |
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| T |
4045504 |
gtaatttgttatggtggattcatagtaggtgaagaatg |
4045467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 58 - 184
Target Start/End: Complemental strand, 6464707 - 6464581
Alignment:
| Q |
58 |
gatggaaagggtttatctatgctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaatgttggaaggttttgctaatggaaactcatt |
157 |
Q |
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| T |
6464707 |
gatggaaagggtttgtctatgccttggaaggagtttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatggaaactcatt |
6464608 |
T |
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| Q |
158 |
cagtaatctcttatggtggatccatag |
184 |
Q |
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| T |
6464607 |
gactaatctcttatggtggattcatag |
6464581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 58 - 178
Target Start/End: Complemental strand, 6496047 - 6495927
Alignment:
| Q |
58 |
gatggaaagggtttatctatgctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaatgttggaaggttttgctaatggaaactcatt |
157 |
Q |
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| T |
6496047 |
gatggaaagggtttgtatatgccttacaaggaatttatgataaggaaaatgcattgaagaatataagaaatttaaaaggatttgatgatggaaactcatt |
6495948 |
T |
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| Q |
158 |
cagtaatctcttatggtggat |
178 |
Q |
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| T |
6495947 |
gactaatctcttgtggtggat |
6495927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 178
Target Start/End: Original strand, 6462625 - 6462745
Alignment:
| Q |
58 |
gatggaaagggtttatctatgctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaatgttggaaggttttgctaatggaaactcatt |
157 |
Q |
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|||||||||||||| | |||||||| ||||||||||||||||| |||| |||||||||||| || |||| || |||| |||| | ||||||||||||| |
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| T |
6462625 |
gatggaaagggtttgtatatgctttacaaggaatttatgataaggaaactgcattgaagaatataagaaatttaaaaggatttgatgatggaaactcatt |
6462724 |
T |
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| Q |
158 |
cagtaatctcttatggtggat |
178 |
Q |
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| T |
6462725 |
gactaatcttttgtggtggat |
6462745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 188
Target Start/End: Original strand, 6473847 - 6473977
Alignment:
| Q |
58 |
gatggaaagggtttatctatgctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaatgttggaaggttttgctaatggaaactcatt |
157 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||||||||||||| |||| || ||||||||| || | || ||| | | |||| | ||||||| ||||| |
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| T |
6473847 |
gatggaaaggttttgtctatgcattgcaaggaatttatgataatgaaagtggattgaagaatataaaaagtttgaatagatttgatgatggaaattcatt |
6473946 |
T |
|
| Q |
158 |
cagtaatctcttatggtggatccatagcaga |
188 |
Q |
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| |||||||||||||||||| ||||||||| |
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| T |
6473947 |
gactaatctcttatggtggattcatagcaga |
6473977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 178
Target Start/End: Complemental strand, 6525743 - 6525625
Alignment:
| Q |
60 |
tggaaagggtttatctatgctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaatgttggaaggttttgctaatggaaactcattca |
159 |
Q |
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||||| |||||| | ||||| |||||||| ||||||||||| |||| |||| | ||||||| |||| |||| | ||||||| | ||||||||||||| | |
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| T |
6525743 |
tggaaggggtttgtttatgccttgcaagggatttatgataatgaaagtgcacagcagaagataagaaagttgaagggttttgatgatggaaactcattga |
6525644 |
T |
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| Q |
160 |
gtaatctcttatggtggat |
178 |
Q |
| |
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|||||| ||||||||||| |
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| T |
6525643 |
ctaatctattatggtggat |
6525625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 188
Target Start/End: Complemental strand, 6504824 - 6504721
Alignment:
| Q |
85 |
aaggaatttatgataaagaaaatgcattgaagaagattagaatgttggaaggttttgctaatggaaactcattcagtaatctcttatggtggatccatag |
184 |
Q |
| |
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|||||||||||||||| |||| ||||||||||||||| |||| ||| | ||||||| | ||||||||| || | |||||| || |||||||| ||||| |
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| T |
6504824 |
aaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatggtggaaactctttgactaatcttttgtggtggattcatag |
6504725 |
T |
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| Q |
185 |
caga |
188 |
Q |
| |
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|||| |
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| T |
6504724 |
caga |
6504721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 6516934 - 6517043
Alignment:
| Q |
75 |
tatgctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaatgttggaaggttttgctaatggaaactcattcagtaatctcttatggt |
174 |
Q |
| |
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||||| ||| |||||||||||||||| |||| ||||||||||||||| |||| ||| | ||||||| | ||||||||| || | |||||| || |||| |
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| T |
6516934 |
tatgcattggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatggtggaaactctttgactaatcttttgtggt |
6517033 |
T |
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| Q |
175 |
ggatccatag |
184 |
Q |
| |
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|||| ||||| |
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| T |
6517034 |
ggattcatag |
6517043 |
T |
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