View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_high_59 (Length: 207)
Name: NF17625_high_59
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_high_59 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 43997971 - 43998151
Alignment:
| Q |
15 |
agagacatatagaacggaaaatgggtttgacacttttctgaaaagg-tcattaaggtgatgtaattatcttaagatatagtgataggttgataatcaaac |
113 |
Q |
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| T |
43997971 |
agagacatatagaacggaaaatgggtttgacacttttctgaaaagggtcattaaggtgatgtaattatcttaagatatagtgatcggttgataatcaaac |
43998070 |
T |
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| Q |
114 |
aga-tagattagacaatattcagttaatcaagaagataatttcttcttttaattttaatgagctaggtccatctccttttt |
193 |
Q |
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| T |
43998071 |
agaatagattagacaatattcagttaatcaagaagataatttcttcttttaattttaatgagctaggtccatctccttttt |
43998151 |
T |
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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 42213302 - 42213206
Alignment:
| Q |
18 |
gacatatagaacggaaaa-tgggtttgacacttttctgaaaagg-tcattaaggtgatgtaattatcttaagatatagtgataggttgataatcaaa |
112 |
Q |
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| T |
42213302 |
gacatatagaacggaaaaatgactttagcacttttctaaaacgggtgattaaggtgatgtaattatcttaagatatagtgataggttgataatcaaa |
42213206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 42213167 - 42213112
Alignment:
| Q |
129 |
tattcagttaatcaagaagataatttcttcttttaattttaatgagctaggtccat |
184 |
Q |
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| T |
42213167 |
tattcagttaatcaagaagataattttttcctttaatcttaattagctaggtccat |
42213112 |
T |
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