View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17625_low_11 (Length: 442)

Name: NF17625_low_11
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17625_low_11
NF17625_low_11
[»] chr4 (3 HSPs)
chr4 (158-315)||(56342948-56343108)
chr4 (387-435)||(56343180-56343228)
chr4 (13-43)||(56342797-56342827)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 158 - 315
Target Start/End: Original strand, 56342948 - 56343108
Alignment:
Q  158 caacaaccactcttcctcttcccttcttgctagtttagaagacagtttgagtgatgcaaacaacgctgatggtttc---ttcgattcaaagagtgatgtt 254  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |      |||||||||||||||||||||    
T  56342948 caacaaccactcttcctcttcccttcttgcaagtttagaagacagtttgagtgatgcaaacaacgctgatgatgctggtttcgattcaaagagtgatgtt 56343047  T
Q  255 gggacccgctcctcctttttcagatattcaaatccaagaacaacaatccctccccctcttc 315  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  56343048 gggacccgctcctcctttttcagaaattcaaatccaagaacaacaatccctccccctcttc 56343108  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 387 - 435
Target Start/End: Original strand, 56343180 - 56343228
Alignment:
Q  387 gatgactctggagatgattattctaactccatttccggtgcttcatctc 435  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  56343180 gatgactctggagatgattattctaactccatttccggtgcttcttctc 56343228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 56342797 - 56342827
Alignment:
Q  13 tcagaaatcccaattcacttcctacttcctc 43  Q
    |||||||||||||||||||||||||||||||    
T  56342797 tcagaaatcccaattcacttcctacttcctc 56342827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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