View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17625_low_15 (Length: 409)

Name: NF17625_low_15
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17625_low_15
NF17625_low_15
[»] chr6 (3 HSPs)
chr6 (16-398)||(31262820-31263202)
chr6 (213-297)||(19845504-19845589)
chr6 (217-297)||(15342386-15342467)
[»] scaffold0186 (1 HSPs)
scaffold0186 (217-297)||(27627-27708)
[»] chr8 (4 HSPs)
chr8 (217-297)||(24921069-24921150)
chr8 (217-297)||(1083397-1083478)
chr8 (217-297)||(31390889-31390970)
chr8 (217-297)||(40502704-40502785)
[»] chr3 (3 HSPs)
chr3 (217-297)||(13819041-13819122)
chr3 (217-297)||(4267597-4267678)
chr3 (250-297)||(12211238-12211285)
[»] chr1 (4 HSPs)
chr1 (217-297)||(29496742-29496823)
chr1 (217-297)||(24707721-24707802)
chr1 (217-297)||(19148840-19148921)
chr1 (217-297)||(23675894-23675975)
[»] chr7 (1 HSPs)
chr7 (217-297)||(41549133-41549214)
[»] chr4 (1 HSPs)
chr4 (217-297)||(55042433-55042514)


Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 398
Target Start/End: Complemental strand, 31263202 - 31262820
Alignment:
Q  16 gttttaactataataaaatatccttcggctctaataacatttcaaatggcttggtgatataatcaaatttcaatgttgtgtgcatttatccaacatccgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31263202 gttttaactataataaaatatccttcggctctaataacatttcaaatggcttggtgatataatcaaatttcaatgttgtgtgcatttatccaacatccgt 31263103  T
Q  116 catacaaacaccgttaaaatttatcttaataatcatacctagtgcaaatgaaaatatagagcatcacaagcatactgacatattatactatacgattgtt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31263102 catacaaacaccgttaaaatttatcttaataatcatacctagtgcaaatgaaaatatagagcatcacaagcatactgacatattatactatacgattgtt 31263003  T
Q  216 gaacaaagttagtaactagcaacatattatgtttcattaatattataggtgcaacatggttctactaaattaaaaatagcatnnnnnnnttttacattac 315  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  31263002 caacaaagttagtaactagcaacatattatgtttcattaatattataggtgcaacatggttctactaaattaaaaatagcataaaaattttttacattac 31262903  T
Q  316 aattttatcaagccacttcattaatttaaatcttctttctcgtatcaccattcatccacggcaaacgcagaaccccacttcat 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31262902 aattttatcaagccacttcattaatttaaatcttctttctcgtatcaccattcatccacggcaaacgcagaaccccacttcat 31262820  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 19845589 - 19845504
Alignment:
Q  213 gttgaacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 297  Q
    ||||||||| ||||||||||| ||||||||  |||||| ||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  19845589 gttgaacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcaacatggtcctattaaataaaaaatagcat 19845504  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 15342386 - 15342467
Alignment:
Q  217 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 297  Q
    ||||| ||||||||||| ||||||||  |||||| |||||||||| || ||| ||||||| ||||||| | |||||||||||    
T  15342386 aacaatgttagtaactaacaacatatggtgtttccattaatattacagatgcgacatggtcctactaattaaaaaatagcat 15342467  T

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Target: scaffold0186 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 27708 - 27627
Alignment:
Q  217 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 297  Q
    ||||| ||||||||||| ||||||||  |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  27708 aacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 27627  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 24921069 - 24921150
Alignment:
Q  217 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 297  Q
    ||||| ||||||||||| ||||||||  |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  24921069 aacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 24921150  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 1083397 - 1083478
Alignment:
Q  217 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 297  Q
    ||||| |||| |||||| ||||||||  |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  1083397 aacaatgttaataactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 1083478  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 31390970 - 31390889
Alignment:
Q  217 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 297  Q
    ||||| |||| |||||| ||||||||  |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  31390970 aacaatgttaataactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 31390889  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 40502704 - 40502785
Alignment:
Q  217 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 297  Q
    ||||| ||||||||||| ||||||||  |||||| |||||||||| || ||||||||||| ||||||| | |||||||||||    
T  40502704 aacaatgttagtaactaacaacatatggtgtttccattaatattacagatgcaacatggtcctactaattaaaaaatagcat 40502785  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 13819041 - 13819122
Alignment:
Q  217 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 297  Q
    ||||| ||||||||||| ||||||||  |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  13819041 aacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 13819122  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 4267678 - 4267597
Alignment:
Q  217 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 297  Q
    ||||| |||| |||||| |||||||   |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  4267678 aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 4267597  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 12211285 - 12211238
Alignment:
Q  250 cattaatattataggtgcaacatggttctactaaattaaaaatagcat 297  Q
    |||||||||||||||||| |||| || ||||||||| |||||||||||    
T  12211285 cattaatattataggtgcgacattgtcctactaaataaaaaatagcat 12211238  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 29496823 - 29496742
Alignment:
Q  217 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 297  Q
    ||||| ||||||||||| ||||||||  |||||| | ||||||||||||||||||||||| ||||||||| |||| ||||||    
T  29496823 aacaatgttagtaactaacaacatatggtgtttccaataatattataggtgcaacatggtcctactaaataaaaagtagcat 29496742  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 24707802 - 24707721
Alignment:
Q  217 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 297  Q
    ||||| ||||||||||| ||||||||  |||||| ||||||||||||||||| ||||| | ||||||| | |||||||||||    
T  24707802 aacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcgacatgatcctactaattaaaaaatagcat 24707721  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 19148840 - 19148921
Alignment:
Q  217 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 297  Q
    ||||| |||| |||||| |||||||   |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  19148840 aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 19148921  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 23675894 - 23675975
Alignment:
Q  217 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 297  Q
    ||||| |||| |||||| |||||||   |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  23675894 aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 23675975  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 41549214 - 41549133
Alignment:
Q  217 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 297  Q
    ||||| |||| |||||| |||||||   |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  41549214 aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 41549133  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 55042514 - 55042433
Alignment:
Q  217 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 297  Q
    ||||| |||| |||||| |||||||   |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  55042514 aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 55042433  T

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