View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_low_17 (Length: 392)
Name: NF17625_low_17
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_17 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 232 - 392
Target Start/End: Complemental strand, 7388798 - 7388638
Alignment:
| Q |
232 |
agaatgctcgtcttttgggcggaattgtgttttataatatcgaatagtgtgttgtcttttggggagcactaacacacaaaggaatatgaacattagaaca |
331 |
Q |
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| T |
7388798 |
agaatgctcattttttgggcggatttgtgttttataatatcgaatagtgtgttgtcttttggggagcactaacacataaaggaatatgaacattagaaca |
7388699 |
T |
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| Q |
332 |
tagtggctgggttctgacaagcttttatcttttctcctttattgttgtgttgtacatggac |
392 |
Q |
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| T |
7388698 |
tagtggctgggttctgacaagcttttatcttttctcctttattgttgtgttgtacatggac |
7388638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 7389024 - 7388861
Alignment:
| Q |
6 |
cataggttaatgactgctaagataagaaaattaagatgaaataagaaaaaa--tgaccatggttgggtcccgtcgtaattgactttgaataatattgaaa |
103 |
Q |
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| T |
7389024 |
cataggttaatgactgctaagataagaaaattaagatcaaatatgaaaaaaaatgaccatggttgggtcccgtcgtaattgactttgaataatattgaaa |
7388925 |
T |
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| Q |
104 |
gacagctagcgcacattgttctggacgttttcataccataaaatggagtcgttaaaagccaggtct |
169 |
Q |
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| T |
7388924 |
gacagcta--gcacattgttttggacgttttcataccataaaatggagtcgttaaaagccaggtct |
7388861 |
T |
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