View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_low_18 (Length: 387)
Name: NF17625_low_18
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 191 - 368
Target Start/End: Complemental strand, 2260107 - 2259930
Alignment:
| Q |
191 |
cttaattaggaaattaataagagattgaatgattattacagcaatgctcttagattcctgagaagcttctcagattcgtggaaataaatgttgacaacct |
290 |
Q |
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| T |
2260107 |
cttaattaggaaattaataagagattgaatgattattacagcaatgctcttagattcctgagaagcttctcagattcgtggaaataaatgttgacaacct |
2260008 |
T |
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| Q |
291 |
cagagacaaagtttggtgaggtttcatcttgtagctgctggagctgcaagaattgctcatccaatactccctataaga |
368 |
Q |
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| T |
2260007 |
catagacaaagtttggtgaggtttcatcttgtagctgctggagctgcaagaattgctcatccaatactccctataaga |
2259930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 2260287 - 2260169
Alignment:
| Q |
11 |
cacagacattagtcactctttttgcaccaatgcttgagctgcttcccataaactgattcaaatcaatccccagtttcttatagtccataaactctctctc |
110 |
Q |
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| T |
2260287 |
cacagacattagtcactctttttgcaccaatgcttgagctgcttcccataaactgattcaaatcaatccccagtttcttatagtccataaactctctctc |
2260188 |
T |
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| Q |
111 |
catcctgaataaattcacg |
129 |
Q |
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| T |
2260187 |
catcctgaataaattcacg |
2260169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 225 - 354
Target Start/End: Original strand, 44734008 - 44734137
Alignment:
| Q |
225 |
attacagcaatgctcttagattcctgagaagcttctcagattcgtggaaataaatgttgacaacctcagagacaaagtttggtgaggtttcatcttgtag |
324 |
Q |
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| T |
44734008 |
attacagcaatgatctgagattggtgagtagtttttcagactcatgaaaataaatgttgacaacttcggatacgaagttaggggaggtgtgatcttgaag |
44734107 |
T |
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| Q |
325 |
ctgctggagctgcaagaattgctcatccaa |
354 |
Q |
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| T |
44734108 |
ctgttgaagctgcaaaaattgctcatccaa |
44734137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 44733780 - 44733831
Alignment:
| Q |
22 |
gtcactctttttgcaccaatgcttgagctgcttcccataaactgattcaaat |
73 |
Q |
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| T |
44733780 |
gtcactcttttagcaccaatgcttgagctgctaccaatgaattgattcaaat |
44733831 |
T |
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