View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_low_19 (Length: 380)
Name: NF17625_low_19
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 12623885 - 12624249
Alignment:
| Q |
16 |
ataagtaccaaacaatggagaaaagatttttattatgaaccatgatgaagttgtgttttaaacttgagttaagtattatactagattcaagatcacaaaa |
115 |
Q |
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| T |
12623885 |
ataagtaccaaacaatggagaaaagatttttattatgaaccatgatgaagttgtgttttaaacttgagttaagtattatactagattcaagatcacaaaa |
12623984 |
T |
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| Q |
116 |
aatgattcatttgcaaatataatctttggaggacca------------------aggaataaggaaggatacacattttcatatgaaaataaaattgatc |
197 |
Q |
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| T |
12623985 |
aatgattcatttgcaaatataatctttggaggaccaactagaggatttacaccaaggaataaggaaggatacacattttcatatgaaaataaaattgatc |
12624084 |
T |
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| Q |
198 |
ctgacgttttgctcattgattttcattcttttgttattttatttctacgacttcttcatgtgttcgatacttggtaaatacagttggaaagaaattgtat |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12624085 |
ctgacgttttgctcattgattttcattcttttgttattttatttctacgactttttcatgtgttcgatacttggtaaatacagttggaaagaaattgtat |
12624184 |
T |
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| Q |
298 |
tcattgatttttattatttggaagtatttcgaatctcatctggaaacttctttgatttcagtttt |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12624185 |
tcattgatttttattatttggaagtatttcgaatctcatctggaaacttctttgatttcagtttt |
12624249 |
T |
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