View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17625_low_2 (Length: 790)

Name: NF17625_low_2
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17625_low_2
NF17625_low_2
[»] chr7 (7 HSPs)
chr7 (159-770)||(18659865-18660475)
chr7 (384-743)||(21131730-21132089)
chr7 (379-770)||(21112743-21113134)
chr7 (468-744)||(21124163-21124442)
chr7 (491-725)||(21106849-21107083)
chr7 (488-684)||(21097227-21097423)
chr7 (161-253)||(21126739-21126831)
[»] chr4 (2 HSPs)
chr4 (379-743)||(39130642-39131006)
chr4 (276-316)||(25669824-25669864)
[»] chr3 (4 HSPs)
chr3 (276-315)||(48505083-48505122)
chr3 (553-638)||(26700069-26700154)
chr3 (553-600)||(26735264-26735311)
chr3 (276-315)||(45941117-45941156)
[»] chr2 (3 HSPs)
chr2 (274-315)||(4379288-4379329)
chr2 (276-309)||(11967112-11967145)
chr2 (274-307)||(43402635-43402668)
[»] chr6 (1 HSPs)
chr6 (286-316)||(20864672-20864702)


Alignment Details
Target: chr7 (Bit Score: 528; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 159 - 770
Target Start/End: Complemental strand, 18660475 - 18659865
Alignment:
Q  159 atctatcatatcatcggtataaagttctcatcctcgtgtagccattactaatgtcaattggagaataggttgaacacataggatagattttactcaatat 258  Q
    ||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||    
T  18660475 atctatcatattattggtataaagttttcatcctcgtgtagtcattactaatgtcaattggaaaatacgttgaacacataagatagattttactcaatat 18660376  T
Q  259 aaaaactgatatcctgattttgtaagaatgagttagacccaatataaaaacttaatatcgagctatcaataataaatgttatcattctagctatatgatt 358  Q
    ||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  18660375 aaaaactgatatcataattttgtaagaatgagttagacc-aatataaaaacttaatatctggctatcaataataaatgttatcattctagctatatgatt 18660277  T
Q  359 tcctgatcttctacgtctattttccaacaggtaagcactcaaagcttttcctcttaaacacaggtaacatcctcttgcttgatgcgggtcaatacaactc 458  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  18660276 tcctgatcttcttcgtctattttccaacaggtaagcactcaaagcttttcctcttaaacacaggtaacatcctcttgcttgatgcgggtcaacacaacac 18660177  T
Q  459 ttggtcttcaaacacagcatcaaatgcttcattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccatcttgtgg 558  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18660176 ttggtcttcaaacacagcatcaaatgcttcattagagttgtatctcaaagaagatggtaatcttgtattacgtgagcttcaaggaactaccatcttgtgg 18660077  T
Q  559 caaagctatgatttcccaacaaatactctccttcctaatcaacctctcactagatacataaaacttgtttcttcaagaagccaaagtaatcattcttctg 658  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18660076 caaagctatgatttcccaacaaatactctccttcctaatcaacctctcactagatacataaaacttgtttcttcaaaaagccaaagtaatcattcttctg 18659977  T
Q  659 gtttctataagtttttctttgatgataacaatgttattcgtctcaattatgatggccctgatgtttcaagtacatattggccacctgctatattgttaag 758  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  18659976 gcttctataagtttttctttgatgataacaatgttattcgtctcaattatgatggtcctgatgtttcaagtacatattggccacctgctttattgttaag 18659877  T
Q  759 ctggcaagctgg 770  Q
    ||||||||||||    
T  18659876 ctggcaagctgg 18659865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 384 - 743
Target Start/End: Complemental strand, 21132089 - 21131730
Alignment:
Q  384 aacaggtaagcactcaaagcttttcctcttaaacacaggtaacatcctcttgcttgatgcgggtcaatacaactcttggtcttcaaacacagcatcaaat 483  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||| || || |||||||||||||||| |||||| ||    
T  21132089 aacaggtaagctctcaaagcttttcctcttaaacaatggtaacatcctcttgcttgatgcgggtcaacactacacttggtcttcaaacacggcatcagat 21131990  T
Q  484 gcttcattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccatcttgtggcaaagctatgatttcccaacaaata 583  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||    
T  21131989 gctccgttagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaagtaccattttgtggcaaagctatgatttcccaaccaata 21131890  T
Q  584 ctctccttcctaatcaacctctcactagatacataaaacttgtttcttcaagaagccaaagtaatcattcttctggtttctataagtttttctttgatga 683  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||    
T  21131889 ctctccttcctaatcaaccactcactagatacacaaaacttgtttcttcaagaagccagagtaatcattcttctggcttctataagtgtttctttgatga 21131790  T
Q  684 taacaatgttattcgtctcaattatgatggccctgatgtttcaagtacatattggccacc 743  Q
    ||||||| | ||||||||| |||||||||| |||||||||||||| ||||||||||||||    
T  21131789 taacaatatcattcgtctcgattatgatggtcctgatgtttcaagcacatattggccacc 21131730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 379 - 770
Target Start/End: Complemental strand, 21113134 - 21112743
Alignment:
Q  379 tttccaacaggtaagcactcaaagcttttcctcttaaacacaggtaacatcctcttgcttgatgcgggtcaatacaactcttggtcttcaaacacagcat 478  Q
    ||||| ||||||||  ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | ||| |||||||||||||||| ||||    
T  21113134 tttccgacaggtaaaaactcaaagcttttcctcttaaacacaggtaacatcatcttgctcgatgcgggtcaacataacacttggtcttcaaacacggcat 21113035  T
Q  479 caaatgcttcattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccatcttgtggcaaagctatgatttcccaac 578  Q
    || ||||| |||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  21113034 cagatgctccattagagttgtatcttagagaagatgggaatcttgtgttacgtgagcttcaaggacctaccatcttgtggcaaagctatgatttcccgac 21112935  T
Q  579 aaatactctccttcctaatcaacctctcactagatacataaaacttgtttcttcaagaagccaaagtaatcattcttctggtttctataagtttttcttt 678  Q
    |||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||    
T  21112934 aaatactctccttcctaatcaacctctcactagatatacaaaccttgtttcttcaagaagccatagtaatcattcttctggcttttataagttgttcttt 21112835  T
Q  679 gatgataacaatgttattcgtctcaattatgatggccctgatgtttcaagtacatattggccacctgctatattgttaagctggcaagctgg 770  Q
    |||||||||||||||||||||||| |||||||||| |||||| ||||||| ||||||||||||||  || | |||||||| |||||||||||    
T  21112834 gatgataacaatgttattcgtctcgattatgatggtcctgatatttcaagcacatattggccaccatcttttttgttaagttggcaagctgg 21112743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 468 - 744
Target Start/End: Complemental strand, 21124442 - 21124163
Alignment:
Q  468 aaacacagcatcaaatgcttcattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccatcttgtggcaaagctat 567  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || ||||||||    
T  21124442 aaacacagcatcagatgctccattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaagaactaccattttgggggaaagctat 21124343  T
Q  568 gatttcccaacaaatactctccttcctaatcaacctctcactag---atacataaaacttgtttcttcaagaagccaaagtaatcattcttctggtttct 664  Q
    ||||||||||||||| ||||||||||||||||||||||||||||   ||||| ||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  21124342 gatttcccaacaaattctctccttcctaatcaacctctcactagataatacacaaaacttatttcttcaagaagccagagtaatcattcttctggcttct 21124243  T
Q  665 ataagtttttctttgatgataacaatgttattcgtctcaattatgatggccctgatgtttcaagtacatattggccacct 744  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  21124242 ataagtgtttctttgatgataacaatgttattcgtctcgattatgatggccctgatgtttcaagcacatattggccacct 21124163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 491 - 725
Target Start/End: Original strand, 21106849 - 21107083
Alignment:
Q  491 tagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccatcttgtggcaaagctatgatttcccaacaaatactctcct 590  Q
    |||||||| |||||||||| ||||| ||||||||||| ||||||||||||||||  || || |||||||| || | ||| |  |||||| ||||||||||    
T  21106849 tagagttgcatctcaaagatgatggaaatcttgtgttgcgtgagcttcaaggaatcacaattttgtggcagagttttgactctccaacagatactctcct 21106948  T
Q  591 tcctaatcaacctctcactagatacataaaacttgtttcttcaagaagccaaagtaatcattcttctggtttctataagtttttctttgatgataacaat 690  Q
    |||   ||||||||| || ||||| | ||| |||||  ||||||||||  | |||||||||||| |||| ||||| ||||| | ||||||||||   |||    
T  21106949 tccaggtcaacctcttacaagatatacaaagcttgtagcttcaagaagtgagagtaatcattctactggcttctacaagttctactttgatgatgcaaat 21107048  T
Q  691 gttattcgtctcaattatgatggccctgatgtttc 725  Q
    ||| || ||||  ||||||||||||||||| ||||    
T  21107049 gttcttggtcttcattatgatggccctgatatttc 21107083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 488 - 684
Target Start/End: Original strand, 21097227 - 21097423
Alignment:
Q  488 cattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccatcttgtggcaaagctatgatttcccaacaaatactct 587  Q
    ||||||| ||| |||||||| | ||||| ||||||||||| ||||||||||||||||  | ||| |||||||| || | ||| |  |||||| |||||||    
T  21097227 cattagaattgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacattttgtggcagagttttgactctccaacagatactct 21097326  T
Q  588 ccttcctaatcaacctctcactagatacataaaacttgtttcttcaagaagccaaagtaatcattcttctggtttctataagtttttctttgatgat 684  Q
    ||||||   ||||||||| || ||||| | ||| ||||| ||||||| |||  | ||||||||||||||||| ||||||| ||| ||||||||||||    
T  21097327 ccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctggcttctatatgttcttctttgatgat 21097423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 21126831 - 21126739
Alignment:
Q  161 ctatcatatcatcggtataaagttctcatcctcgtgtagccattactaatgtcaattggagaataggttgaacacataggatagattttactc 253  Q
    |||||||||||||||||||||||| |||||||||| || |||||||||| |||||||||| |||| |||||||||||| |||| |||||||||    
T  21126831 ctatcatatcatcggtataaagttttcatcctcgtctaaccattactaacgtcaattggaaaatacgttgaacacataagatatattttactc 21126739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 379 - 743
Target Start/End: Original strand, 39130642 - 39131006
Alignment:
Q  379 tttccaacaggtaagcactcaaagcttttcctcttaaacacaggtaacatcctcttgcttgatgcgggtcaatacaactcttggtcttcaaacacagcat 478  Q
    |||| ||||||||||| ||||||||||| |||||||||||||||||| ||||| ||||||||||| |||||| |||||  ||||||||||||||||| ||    
T  39130642 tttcaaacaggtaagctctcaaagctttccctcttaaacacaggtaatatccttttgcttgatgccggtcaaaacaacatttggtcttcaaacacagaat 39130741  T
Q  479 caaatgcttcattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccatcttgtggcaaagctatgatttcccaac 578  Q
    ||||  || || ||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  39130742 caaacactccactagagttgtatctaaaagaagatggcaatcttgtgttacgtgagcttcaaggtactacgatcttgtggcaaagctatgattttccaac 39130841  T
Q  579 aaatactctccttcctaatcaacctctcactagatacataaaacttgtttcttcaagaagccaaagtaatcattcttctggtttctataagtttttcttt 678  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| || ||||||||||||||||| ||||||||||| || |||    
T  39130842 aaatactctccttcctaatcaacctctcactagatacacaaaacttggttcctcaagaagtcagagtaatcattcttctggcttctataagttgtttttt 39130941  T
Q  679 gatgataacaatgttattcgtctcaattatgatggccctgatgtttcaagtacatattggccacc 743  Q
    |||||||||||| ||||||||||  | |||||||| |||||||||||||| ||||||||||||||    
T  39130942 gatgataacaatattattcgtctagaatatgatggtcctgatgtttcaagcacatattggccacc 39131006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 25669824 - 25669864
Alignment:
Q  276 ttttgtaagaatgagttagacccaatataaaaacttaatat 316  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  25669824 ttttgtaagaatgagttaggccctatataaaaacttaatat 25669864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 48505083 - 48505122
Alignment:
Q  276 ttttgtaagaatgagttagacccaatataaaaacttaata 315  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  48505083 ttttgtaaggatgagttagacccaatataaaaacttaata 48505122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 638
Target Start/End: Complemental strand, 26700154 - 26700069
Alignment:
Q  553 ttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaacctctcactagatacataaaacttgtttcttcaagaag 638  Q
    ||||||||||| | ||||||||||||| |||||||||||||| |||||  | | ||| | ||||| || |||||||| ||||||||    
T  26700154 ttgtggcaaagttttgatttcccaacagatactctccttcctgatcaagatttgactgggtacatgaaccttgtttcgtcaagaag 26700069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 600
Target Start/End: Complemental strand, 26735311 - 26735264
Alignment:
Q  553 ttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaa 600  Q
    ||||||||||| | ||||||||||||| |||||||||||||| |||||    
T  26735311 ttgtggcaaagttttgatttcccaacagatactctccttcctgatcaa 26735264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 45941156 - 45941117
Alignment:
Q  276 ttttgtaagaatgagttagacccaatataaaaacttaata 315  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  45941156 ttttgtaaggatgagttagacccaatctaaaaacttaata 45941117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 4379288 - 4379329
Alignment:
Q  274 gattttgtaagaatgagttagacccaatataaaaacttaata 315  Q
    |||||||||||||||||||| |||||||||| ||||||||||    
T  4379288 gattttgtaagaatgagttaaacccaatatacaaacttaata 4379329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 276 - 309
Target Start/End: Complemental strand, 11967145 - 11967112
Alignment:
Q  276 ttttgtaagaatgagttagacccaatataaaaac 309  Q
    ||||||||||||||||||||||||||||||||||    
T  11967145 ttttgtaagaatgagttagacccaatataaaaac 11967112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 307
Target Start/End: Original strand, 43402635 - 43402668
Alignment:
Q  274 gattttgtaagaatgagttagacccaatataaaa 307  Q
    |||||||||||||||| |||||||||||||||||    
T  43402635 gattttgtaagaatgaattagacccaatataaaa 43402668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 286 - 316
Target Start/End: Complemental strand, 20864702 - 20864672
Alignment:
Q  286 atgagttagacccaatataaaaacttaatat 316  Q
    |||||||||||||||||||||||||||||||    
T  20864702 atgagttagacccaatataaaaacttaatat 20864672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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