View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_low_20 (Length: 373)
Name: NF17625_low_20
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 2504972 - 2505307
Alignment:
| Q |
18 |
tatacatgactttaatacacatacattaataatagtttgagaaaatataagtgattaaatatatctatatgtgtcgccgacacaataaaactgaaataa- |
116 |
Q |
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| T |
2504972 |
tatacatgactctaatacacatgcattaataatagtttgagaaaatataagtgattaaatatatctat--gtgtcgccgacacaataaaactgaattaaa |
2505069 |
T |
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| Q |
117 |
ttaccaatatactattagaagaaataatgaagaagcatataaaagagattttatttatccttagatgtcactgaaataagcaattacaatcaagactata |
216 |
Q |
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| T |
2505070 |
ttatcaatatactattagaagaaacaatgaagaagcatataaaagagattttatttatccttagatgtcactgaaataagcaattacaatcaagactata |
2505169 |
T |
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| Q |
217 |
gtgaagaaagattaatacagaaggccatacaaagagtgcttgttattcaacacacaaaatcaaatgaaagcatcggcattcattcacgagcaacaacaag |
316 |
Q |
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| T |
2505170 |
gtgaagaaagattaatacagaaggccatacaaagagggcttgttattcaatacac--aatcaaatgaaagcatcggcattcattcacgagcaacaacaag |
2505267 |
T |
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| Q |
317 |
cacttgtttgccaacatttttgccactaaatattccaacc |
356 |
Q |
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| T |
2505268 |
cacttgtttgccaacatttttgccactaaatatgccaacc |
2505307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 101 - 356
Target Start/End: Original strand, 2511671 - 2511928
Alignment:
| Q |
101 |
aataaaactgaaataa-ttaccaatatactattagaagaaataatgaagaagcatataaaagagattttatttatccttagatgtcactgaaataagcaa |
199 |
Q |
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| T |
2511671 |
aataaaactgaattaagttatcaatatactattagaagaaacaatgaagaagcatataatagagatcttatttatcattagatgtcactgaagtaagcaa |
2511770 |
T |
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| Q |
200 |
ttacaatcaagactatagtgaagaaagattaatacagaaggccatacaaagagtgcttgttattcaacac-acaaaatcaaatgaaagcatcggcattca |
298 |
Q |
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| T |
2511771 |
ttacagtcaacactatggtgaaggaagattaacacaaaaggccatacaaagagggcttgttattcaacacaaaaaaatcaaatgaaagcatctgcattca |
2511870 |
T |
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| Q |
299 |
ttcacgagcaacaacaagcacttgtttgccaacatttttgccactaaatattccaacc |
356 |
Q |
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| T |
2511871 |
ttcacgagcaacaacaagcacttgtttgccaacatttttaccactaaatatgccaacc |
2511928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 2432869 - 2432817
Alignment:
| Q |
282 |
gaaagcatcggcattcattcacgagcaacaacaagcacttgtttgccaacatt |
334 |
Q |
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| T |
2432869 |
gaaagcatctgcattcattcatgagcaacaacaaccacttgtttaccaacatt |
2432817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 2516141 - 2516177
Alignment:
| Q |
298 |
attcacgagcaacaacaagcacttgtttgccaacatt |
334 |
Q |
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| T |
2516141 |
attcacgagcaacaacaaccacttgtttaccaacatt |
2516177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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