View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17625_low_25 (Length: 356)

Name: NF17625_low_25
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17625_low_25
NF17625_low_25
[»] chr3 (15 HSPs)
chr3 (189-338)||(6232763-6232915)
chr3 (216-335)||(6261121-6261245)
chr3 (231-333)||(6270620-6270734)
chr3 (101-163)||(40892828-40892890)
chr3 (100-155)||(52762996-52763051)
chr3 (276-335)||(6163239-6163298)
chr3 (116-167)||(53653144-53653194)
chr3 (281-335)||(6138153-6138207)
chr3 (112-167)||(38832986-38833043)
chr3 (99-155)||(50662444-50662500)
chr3 (100-163)||(29793460-29793523)
chr3 (100-163)||(36754763-36754826)
chr3 (281-335)||(6135432-6135486)
chr3 (112-165)||(32497810-32497863)
chr3 (122-167)||(51490200-51490245)
[»] chr6 (5 HSPs)
chr6 (100-167)||(31330550-31330617)
chr6 (101-164)||(9245959-9246022)
chr6 (100-146)||(11393716-11393762)
chr6 (107-146)||(2667397-2667436)
chr6 (115-167)||(30533694-30533747)
[»] chr2 (7 HSPs)
chr2 (100-163)||(25749704-25749767)
chr2 (100-154)||(45716464-45716518)
chr2 (100-163)||(6599360-6599424)
chr2 (112-163)||(7820060-7820111)
chr2 (100-155)||(8329693-8329748)
chr2 (121-164)||(9620621-9620664)
chr2 (100-163)||(33635726-33635789)
[»] chr1 (6 HSPs)
chr1 (100-163)||(963988-964051)
chr1 (100-167)||(14171845-14171912)
chr1 (100-163)||(26127295-26127358)
chr1 (113-167)||(19998568-19998622)
chr1 (113-167)||(26537512-26537567)
chr1 (115-164)||(31820745-31820794)
[»] chr7 (7 HSPs)
chr7 (101-167)||(30898064-30898130)
chr7 (99-167)||(34224285-34224353)
chr7 (100-163)||(45879147-45879210)
chr7 (99-167)||(9047126-9047193)
chr7 (116-163)||(6221079-6221125)
chr7 (100-146)||(28359738-28359784)
chr7 (130-167)||(8919414-8919451)
[»] scaffold0007 (1 HSPs)
scaffold0007 (112-167)||(185476-185531)
[»] chr8 (6 HSPs)
chr8 (100-163)||(13015391-13015454)
chr8 (100-167)||(41013275-41013342)
chr8 (115-167)||(18087225-18087277)
chr8 (112-164)||(33986891-33986943)
chr8 (116-167)||(16938928-16938979)
chr8 (124-167)||(27924512-27924555)
[»] chr5 (6 HSPs)
chr5 (100-163)||(932149-932212)
chr5 (100-163)||(26440118-26440181)
chr5 (101-163)||(8590149-8590211)
chr5 (101-155)||(26295533-26295587)
chr5 (117-165)||(5091816-5091864)
chr5 (99-143)||(24181835-24181879)
[»] chr4 (5 HSPs)
chr4 (100-167)||(1955320-1955388)
chr4 (116-160)||(47742774-47742818)
chr4 (112-167)||(1051818-1051873)
chr4 (112-155)||(12763405-12763448)
chr4 (107-163)||(34015758-34015814)
[»] scaffold0191 (1 HSPs)
scaffold0191 (100-167)||(4572-4639)
[»] scaffold0257 (1 HSPs)
scaffold0257 (101-167)||(18854-18922)


Alignment Details
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 189 - 338
Target Start/End: Complemental strand, 6232915 - 6232763
Alignment:
Q  189 tttgatgaaagtaattttcatgtgtaattattggtagtaaaattttctcatagactatgcaaaatgtaacatcaatgtaa-----tgttgaatggtgatc 283  Q
    ||||||||||||||||||  |||||||||||||||||||||||| |||| ||||||||||||||||||||||| | ||||     || ||||| ||||||    
T  6232915 tttgatgaaagtaatttt--tgtgtaattattggtagtaaaattctctcgtagactatgcaaaatgtaacatccacgtaaaccattgctgaattgtgatc 6232818  T
Q  284 aattaattccaactcatgattgacgcatacagaatctcattccaagtatctgaga 338  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  6232817 aattaattccaactcatgattgacggatacagaatctcattccaggtatctgaga 6232763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 335
Target Start/End: Complemental strand, 6261245 - 6261121
Alignment:
Q  216 ttattggtagtaaaattttctcatagactatgcaaaatgtaacatcaatgtaa-----tgttgaatggtgatcaattaattccaactcatgattgacgca 310  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||||| ||||||     || ||| ||||||||||||||||||| |||||||||||||||    
T  6261245 ttattggtaataaagttttctcatggactatgcaaaatgtaacatccatgtaaaccattgctgattggtgatcaattaattccagctcatgattgacgca 6261146  T
Q  311 tacagaatctcattccaagtatctg 335  Q
    |||| ||| ||||||||| ||||||    
T  6261145 tacaaaatgtcattccaactatctg 6261121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 231 - 333
Target Start/End: Complemental strand, 6270734 - 6270620
Alignment:
Q  231 ttttctcatagactatgcaaaatgtaacatcaatgtaa-----tgttgaatggtgatcaattaattccaac-------tcatgattgacgcatacagaat 318  Q
    ||||||||| ||||||||||||||||||||| ||||||     ||||||||||||||||||||||||||||       ||||||||||| ||||||||||    
T  6270734 ttttctcatggactatgcaaaatgtaacatccatgtaaaccattgttgaatggtgatcaattaattccaacccatgagtcatgattgacccatacagaat 6270635  T
Q  319 ctcattccaagtatc 333  Q
    |||||||||| ||||    
T  6270634 ctcattccaactatc 6270620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 40892890 - 40892828
Alignment:
Q  101 aaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattt 163  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| |||||||    
T  40892890 aaagtcaagttttgcattgaaaagaacactttattaactttcaaaaagtagaatacacaattt 40892828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 52763051 - 52762996
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaata 155  Q
    ||||||||||| |||||||||||||||| |||||||||||||||| | ||||||||    
T  52763051 aaaagtcaagttttgcattgaaaagaactcttttttaactttcaagaagtagaata 52762996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 6163298 - 6163239
Alignment:
Q  276 tggtgatcaattaattccaactcatgattgacgcatacagaatctcattccaagtatctg 335  Q
    |||| |||| ||||||| || |||||||||| ||||||| ||||||||||||||||||||    
T  6163298 tggtaatcacttaattcaaattcatgattgatgcatacataatctcattccaagtatctg 6163239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 53653194 - 53653144
Alignment:
Q  116 attgaaaagaacacttttttaactttcaaaatgtagaatatacaattttcaa 167  Q
    |||||||||||||||||||||||||| |||| |||||||| |||||||||||    
T  53653194 attgaaaagaacacttttttaacttt-aaaaagtagaatacacaattttcaa 53653144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 6138207 - 6138153
Alignment:
Q  281 atcaattaattccaactcatgattgacgcatacagaatctcattccaagtatctg 335  Q
    |||| ||||||| || || ||||||| ||||||||||||||||||||||||||||    
T  6138207 atcacttaattctaattcgtgattgatgcatacagaatctcattccaagtatctg 6138153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 38833043 - 38832986
Alignment:
Q  112 ttgcattgaaaagaaca--cttttttaactttcaaaatgtagaatatacaattttcaa 167  Q
    |||||||||||||||||  |||||||||||||||||| |||||||| | |||||||||    
T  38833043 ttgcattgaaaagaacatacttttttaactttcaaaaagtagaatacataattttcaa 38832986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 50662444 - 50662500
Alignment:
Q  99 taaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaata 155  Q
    |||||||||| | ||| ||||||||||||| |||||| |||||||||| ||||||||    
T  50662444 taaaagtcaaattttgtattgaaaagaacatttttttgactttcaaaaagtagaata 50662500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 29793523 - 29793460
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattt 163  Q
    ||||||||| | || |||| |||||||||||||||||||||| |||| ||| |||| |||||||    
T  29793523 aaaagtcaaattttacattaaaaagaacacttttttaacttttaaaaagtaaaatacacaattt 29793460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 36754826 - 36754763
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattt 163  Q
    |||| |||||| |||| ||||||||||||||||||||||||| || |  || ||||||||||||    
T  36754826 aaaactcaagttttgcgttgaaaagaacacttttttaactttaaatagatataatatacaattt 36754763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 6135486 - 6135432
Alignment:
Q  281 atcaattaattccaactcatgattgacgcatacagaatctcattccaagtatctg 335  Q
    |||| ||||||| || | |||||||| ||||| ||||||||||||||||||||||    
T  6135486 atcacttaattctaatttatgattgatgcatagagaatctcattccaagtatctg 6135432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 32497810 - 32497863
Alignment:
Q  112 ttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattttc 165  Q
    |||||||||||| |||| ||||| ||||||||||| ||| |||| |||||||||    
T  32497810 ttgcattgaaaataacattttttaaactttcaaaaagtataatacacaattttc 32497863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 51490200 - 51490245
Alignment:
Q  122 aagaacacttttttaactttcaaaatgtagaatatacaattttcaa 167  Q
    ||||||||||||||||||||||||| ||| |||| | |||||||||    
T  51490200 aagaacacttttttaactttcaaaaggtataatacaaaattttcaa 51490245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 31330617 - 31330550
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattttcaa 167  Q
    ||||||||||| ||  ||| ||||||||||||||||||||||||||| |||||||| |||||||||||    
T  31330617 aaaagtcaagttttatattaaaaagaacacttttttaactttcaaaaagtagaatacacaattttcaa 31330550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 9245959 - 9246022
Alignment:
Q  101 aaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaatttt 164  Q
    |||||||| | ||| |||||||| |||||||||||||||||||||| |||||||  ||||||||    
T  9245959 aaagtcaatttttgtattgaaaataacacttttttaactttcaaaaagtagaatgcacaatttt 9246022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 11393762 - 11393716
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaa 146  Q
    |||| |||||| |||||| ||||||||||||||||||||||||||||    
T  11393762 aaaactcaagttttgcatcgaaaagaacacttttttaactttcaaaa 11393716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 2667436 - 2667397
Alignment:
Q  107 aagtgttgcattgaaaagaacacttttttaactttcaaaa 146  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  2667436 aagttttgcattgaaaagaacacttttttaactttaaaaa 2667397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 30533694 - 30533747
Alignment:
Q  115 cattgaaaagaacactttttt-aactttcaaaatgtagaatatacaattttcaa 167  Q
    ||||||||| ||| ||||||| ||||||||||| |||||||| |||||||||||    
T  30533694 cattgaaaataactcttttttcaactttcaaaaagtagaatacacaattttcaa 30533747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 25749767 - 25749704
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattt 163  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||  ||||||| |||||||    
T  25749767 aaaagtaaagttttgcattgaaaagaacacttttttaactttcaaaaaatagaatacacaattt 25749704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 45716464 - 45716518
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaat 154  Q
    ||||||||| | ||| |||||||| |||||||||||||||||||||| |||||||    
T  45716464 aaaagtcaaattttgtattgaaaataacacttttttaactttcaaaaagtagaat 45716518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 6599360 - 6599424
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaaca-cttttttaactttcaaaatgtagaatatacaattt 163  Q
    ||||||||||| ||||||||||||| |||  ||||||||||||||||| ||| |||| |||||||    
T  6599360 aaaagtcaagttttgcattgaaaagtacattttttttaactttcaaaaagtataatacacaattt 6599424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 7820111 - 7820060
Alignment:
Q  112 ttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattt 163  Q
    |||||||||| | || | ||||||||||||||||| ||||||||||||||||    
T  7820111 ttgcattgaacataatatttttttaactttcaaaaagtagaatatacaattt 7820060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 8329748 - 8329693
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaata 155  Q
    |||| |||||| ||||||| ||||||||||  ||||||||||||||| ||||||||    
T  8329748 aaaattcaagttttgcattaaaaagaacaccattttaactttcaaaaagtagaata 8329693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 9620621 - 9620664
Alignment:
Q  121 aaagaacacttttttaactttcaaaatgtagaatatacaatttt 164  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||    
T  9620621 aaagaacacttttttaatttttaaaaagtagaatatacaatttt 9620664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 33635789 - 33635726
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattt 163  Q
    ||||||||||| ||  || |||||||| |||||||||||||| |||| |||||||| |||||||    
T  33635789 aaaagtcaagttttatatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattt 33635726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 964051 - 963988
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattt 163  Q
    |||||| |||| || ||||||||||||||||||||||||||| |||| |||||||| |||||||    
T  964051 aaaagttaagttttacattgaaaagaacacttttttaactttgaaaaagtagaatacacaattt 963988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 14171912 - 14171845
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattttcaa 167  Q
    |||||| |||| |||||||||||| |||| ||||||||||||||||| ||| |||| |||||||||||    
T  14171912 aaaagtgaagttttgcattgaaaaaaacatttttttaactttcaaaaagtaaaatacacaattttcaa 14171845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 26127358 - 26127295
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattt 163  Q
    ||||||||| | || ||||||||| |||||||||||||||||||||| |||||||| |||||||    
T  26127358 aaaagtcaaattttacattgaaaataacacttttttaactttcaaaaagtagaatacacaattt 26127295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 19998568 - 19998622
Alignment:
Q  113 tgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattttcaa 167  Q
    |||||||||||| ||| |||||||||||| ||||| ||||||| |||||||||||    
T  19998568 tgcattgaaaagtacaattttttaacttttaaaatatagaatacacaattttcaa 19998622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 26537567 - 26537512
Alignment:
Q  113 tgcattgaaaagaacacttttttaactttcaaaatgtag-aatatacaattttcaa 167  Q
    ||||||||||| |||||||||||||||||  ||| |||| ||||||||||||||||    
T  26537567 tgcattgaaaataacacttttttaactttagaaaagtagtaatatacaattttcaa 26537512  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 31820794 - 31820745
Alignment:
Q  115 cattgaaaagaacacttttttaactttcaaaatgtagaatatacaatttt 164  Q
    |||| |||||||||| |||| |||||| |||| |||||||||||||||||    
T  31820794 cattaaaaagaacacgttttgaacttttaaaaagtagaatatacaatttt 31820745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 30898064 - 30898130
Alignment:
Q  101 aaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattttcaa 167  Q
    |||||||||| |||||||| ||||||||  |||||||||||||||| ||||||| |||| |||||||    
T  30898064 aaagtcaagttttgcattggaaagaacatctttttaactttcaaaaagtagaatgtacagttttcaa 30898130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 34224285 - 34224353
Alignment:
Q  99 taaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattttcaa 167  Q
    |||| ||||| | ||||||| |||| |||||||||| |||||| |||| ||||||||||||||||||||    
T  34224285 taaatgtcaacttttgcattaaaaataacactttttcaactttgaaaaagtagaatatacaattttcaa 34224353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 45879210 - 45879147
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattt 163  Q
    ||||||||||| ||| |||||||| ||||| |||||| ||||||||| |||||||| |||||||    
T  45879210 aaaagtcaagttttgtattgaaaaaaacacatttttacctttcaaaaagtagaatacacaattt 45879147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 9047193 - 9047126
Alignment:
Q  99 taaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattttcaa 167  Q
    ||||||| |||| || |||| |||| |||||||||||||||||||||| |||||||  |||||||||||    
T  9047193 taaaagttaagttttacattaaaaa-aacacttttttaactttcaaaaagtagaatccacaattttcaa 9047126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 6221079 - 6221125
Alignment:
Q  116 attgaaaagaacacttttttaactttcaaaatgtagaatatacaattt 163  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||||||    
T  6221079 attgaaaagaatactttt-taactttcaaaaagtagaatatacaattt 6221125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 28359784 - 28359738
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaa 146  Q
    ||||||||| | |||||||||||| | ||||||||||||||||||||    
T  28359784 aaaagtcaaattttgcattgaaaatatcacttttttaactttcaaaa 28359738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 8919451 - 8919414
Alignment:
Q  130 ttttttaactttcaaaatgtagaatatacaattttcaa 167  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  8919451 ttttttaacttttaaaatatagaatatacaattttcaa 8919414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 185476 - 185531
Alignment:
Q  112 ttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattttcaa 167  Q
    |||||||||||||| ||||||| ||| |||||||| |||||||| |||||||||||    
T  185476 ttgcattgaaaagatcacttttctaattttcaaaaagtagaatacacaattttcaa 185531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 13015391 - 13015454
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattt 163  Q
    |||||| |||| ||||||| |||| ||||||||||||| |||||||| |||||||| |||||||    
T  13015391 aaaagttaagttttgcattaaaaacaacacttttttaattttcaaaaagtagaatacacaattt 13015454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 41013342 - 41013275
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattttcaa 167  Q
    |||||| |||| ||||||||||||||| | ||||||||||||||| | | |||||| |||||||||||    
T  41013342 aaaagttaagttttgcattgaaaagaatatttttttaactttcaagaagaagaatacacaattttcaa 41013275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 18087225 - 18087277
Alignment:
Q  115 cattgaaaagaacacttttttaactttcaaaatgtagaatatacaattttcaa 167  Q
    |||| ||||||||||| |||| |||||||||| |||||||| |||||||||||    
T  18087225 cattaaaaagaacactgttttgactttcaaaaagtagaatacacaattttcaa 18087277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 33986943 - 33986891
Alignment:
Q  112 ttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaatttt 164  Q
    ||||||| ||||||||||| ||||||||||||||| ||| |||| ||||||||    
T  33986943 ttgcattaaaaagaacactattttaactttcaaaaagtaaaatacacaatttt 33986891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 16938979 - 16938928
Alignment:
Q  116 attgaaaagaacacttttttaactttcaaaatgtagaatatacaattttcaa 167  Q
    |||||||| | ||||||||||||||| |||| |||||||| |||||||||||    
T  16938979 attgaaaacagcacttttttaactttaaaaaagtagaatacacaattttcaa 16938928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 27924555 - 27924512
Alignment:
Q  124 gaacacttttttaactttcaaaatgtagaatatacaattttcaa 167  Q
    ||||||||||||||||||||||| |||||||| | |||||||||    
T  27924555 gaacacttttttaactttcaaaaagtagaatacataattttcaa 27924512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 932212 - 932149
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattt 163  Q
    |||| |||||| ||||||||||||||||| |||||||||||| |||| ||| |||| |||||||    
T  932212 aaaaatcaagttttgcattgaaaagaacatttttttaactttaaaaaagtaaaatacacaattt 932149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 26440181 - 26440118
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattt 163  Q
    ||||||||| | ||||||| |||| ||||||||||||||||| |||| |||||||| |||||||    
T  26440181 aaaagtcaaattttgcattaaaaataacacttttttaacttttaaaaagtagaatacacaattt 26440118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 8590211 - 8590149
Alignment:
Q  101 aaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattt 163  Q
    |||||||| | |||||||||||| ||||||||||||||||| |||| ||| |||| |||||||    
T  8590211 aaagtcaaattttgcattgaaaataacacttttttaacttttaaaaggtaaaatacacaattt 8590149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 26295533 - 26295587
Alignment:
Q  101 aaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaata 155  Q
    |||||||||| || |||||||||||||| |||||||||||| ||||  |||||||    
T  26295533 aaagtcaagttttacattgaaaagaacatttttttaacttttaaaaaatagaata 26295587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 5091864 - 5091816
Alignment:
Q  117 ttgaaaagaacacttttttaactttcaaaatgtagaatatacaattttc 165  Q
    ||||||||| |||||||| ||||||||||| ||| |||| |||||||||    
T  5091864 ttgaaaagagcactttttcaactttcaaaaagtataatacacaattttc 5091816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 24181879 - 24181835
Alignment:
Q  99 taaaagtcaagtgttgcattgaaaagaacacttttttaactttca 143  Q
    ||||||| || | ||||||||||||||||||||||| ||||||||    
T  24181879 taaaagttaaattttgcattgaaaagaacactttttgaactttca 24181835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 1955388 - 1955320
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacactttttt-aactttcaaaatgtagaatatacaattttcaa 167  Q
    ||||||||| | || |||| |||||||||||||||| |||||| |||| || |||||||||||||||||    
T  1955388 aaaagtcaaatttttcattaaaaagaacactttttttaactttaaaaaagtcgaatatacaattttcaa 1955320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 47742774 - 47742818
Alignment:
Q  116 attgaaaagaacacttttttaactttcaaaatgtagaatatacaa 160  Q
    |||||||||||||||||||||||||| |||||||| |||| ||||    
T  47742774 attgaaaagaacacttttttaacttttaaaatgtataatacacaa 47742818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 1051873 - 1051818
Alignment:
Q  112 ttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattttcaa 167  Q
    |||||||||||||| || |||||||||||| ||||  ||||||| |||||||||||    
T  1051873 ttgcattgaaaagagcaattttttaacttttaaaacatagaatacacaattttcaa 1051818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 12763405 - 12763448
Alignment:
Q  112 ttgcattgaaaagaacacttttttaactttcaaaatgtagaata 155  Q
    |||||||||||| |||||||| ||||||||||||| ||||||||    
T  12763405 ttgcattgaaaataacactttcttaactttcaaaaagtagaata 12763448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 34015814 - 34015758
Alignment:
Q  107 aagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattt 163  Q
    |||| ||| |||||||| ||||| ||||||  |||||||| ||||||||||||||||    
T  34015814 aagttttgtattgaaaaaaacacctttttatttttcaaaaagtagaatatacaattt 34015758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 4639 - 4572
Alignment:
Q  100 aaaagtcaagtgttgcattgaaaagaacacttttttaactttcaaaatgtagaatatacaattttcaa 167  Q
    |||||||||||  || ||| ||||||||| ||| ||||||||||||| || ||||| |||||||||||    
T  4639 aaaagtcaagttctgtattaaaaagaacattttattaactttcaaaaagtggaatacacaattttcaa 4572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 18922 - 18854
Alignment:
Q  101 aaagtcaagtgttgcattgaaaagaacactttttt--aactttcaaaatgtagaatatacaattttcaa 167  Q
    |||||||| | ||||||| ||||||||| ||||||  ||||||||||| |||||||| | |||||||||    
T  18922 aaagtcaaattttgcattaaaaagaacattttttttcaactttcaaaaagtagaatacataattttcaa 18854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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