View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_low_27 (Length: 343)
Name: NF17625_low_27
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 329
Target Start/End: Original strand, 46121406 - 46121727
Alignment:
| Q |
12 |
agcaaaggaaaaa---gtgtgaggaagctttgaagatggtagccatatttggattttctatagggaggtctagtgagtgtacttttgatacaagtgaaaa |
108 |
Q |
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| T |
46121406 |
agcaaaggaaaaatgtgtgtgaggaagctttgaagatggcagtcatatttggattttctatagggaggtctagtgagtgtacttttgatacaagtgaaaa |
46121505 |
T |
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| Q |
109 |
atgtgttatgagaaatggtaactttggacttaaaa-agagaagtgaagttgaaaaagagagtttgttaacgaaaaagagggagcacattgaggtgcacgt |
207 |
Q |
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| T |
46121506 |
atgtgttatgagaaatggtaactttggacttaaaaaagagaagtgaagttgaaaaagagagtttgttaacgaaaaagagggagcacattgaggtacacgt |
46121605 |
T |
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| Q |
208 |
tttagaggaagtgggtttggttgtgagtgatggcttcacaaagtggcctctgactttgtccaattagttgatatgtggaatttagaatttttctaatttt |
307 |
Q |
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| T |
46121606 |
tttagaggaagtgggttttgttgtgagtgatggcttcacaaagtggcctctgactttgtccaattagttgatatgtggaatttggaatttttctaatttt |
46121705 |
T |
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| Q |
308 |
ctctccaattaattccattatt |
329 |
Q |
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| T |
46121706 |
ctctccaattaattccattatt |
46121727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 246
Target Start/End: Complemental strand, 29849090 - 29848859
Alignment:
| Q |
25 |
gtgtgaggaagctttgaagatggtagccatatttggattttctatagggaggtctagtgagtg-----------tacttttgatacaagtgaaaaatgtg |
113 |
Q |
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| T |
29849090 |
gtgtgaggcagctttgaaaatggaagccatatttggattt-cgatagggagctctagtaagtgatgttatatattacttttgatg-aagtgaaaaatgtg |
29848993 |
T |
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| Q |
114 |
ttatgagaaatggt-aactttggacttaaaaagagaagtgaagttgaaaaagagagtttgttaacgaaaaagagggagcacattgaggtgcacgttttag |
212 |
Q |
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| T |
29848992 |
taatgagaaattgttaactttggacttaaaatgaaaactaaagttgacaattggggtttattaacaaaaaagagggagagaattgaggtacacgttttag |
29848893 |
T |
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| Q |
213 |
aggaagtgggtttggttgtgagtgatggcttcac |
246 |
Q |
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| T |
29848892 |
aggtcgtgggttttgttgtaagtgatggtttcac |
29848859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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