View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_low_30 (Length: 333)
Name: NF17625_low_30
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 95 - 310
Target Start/End: Original strand, 21551876 - 21552091
Alignment:
| Q |
95 |
aacacttatcaatgatattaaagnnnnnnnttatgtttatatcttcacannnnnnncactattttcttcatagtaatataatttatatctctacacctta |
194 |
Q |
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| T |
21551876 |
aacacttatcaatgatattaaagaaaaaaattatgtttatatctttacatttttttcacaattttcttcatagtaatataatttatatctctacatctta |
21551975 |
T |
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| Q |
195 |
cctgaattttgattcaaggtaatttgaacttcttggcttttgtcgagaattcgtatattttctttcccccataaaggagcatagtttttctcgaatggaa |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21551976 |
cctgaattttgattcaaggtaatttgaacttcttggctttggtcgagaattcgtatattttctttcccccataaaggagcatagtttttctcgaatggaa |
21552075 |
T |
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| Q |
295 |
cattgtctaagttaac |
310 |
Q |
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|||||||||||||||| |
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| T |
21552076 |
cattgtctaagttaac |
21552091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 21551830 - 21551881
Alignment:
| Q |
14 |
cagaacctgtgggacaaaaacagttgttaaaatcaaatcaccgtaaaacact |
65 |
Q |
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| T |
21551830 |
cagaacctgtgggacaaaaacagttgttaaaatcaaatcaccgtaaaacact |
21551881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 21655725 - 21655616
Alignment:
| Q |
192 |
ttacctgaattttgattcaaggtaatttgaacttcttggcttttgtcgagaattcgtatattttctttcccccataaaggagcatagtttttctcgaatg |
291 |
Q |
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|||||||| | ||||||||| |||| ||||||||| | |||| || ||||||| | |||||||||| ||||||||||||||||||||||| | ||||| |
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| T |
21655725 |
ttacctgattcttgattcaatgtaagttgaacttcccgactttggttgagaatttgcatattttcttgcccccataaaggagcatagttttgcatgaatg |
21655626 |
T |
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| Q |
292 |
gaacattgtc |
301 |
Q |
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|||||||||| |
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| T |
21655625 |
gaacattgtc |
21655616 |
T |
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