View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_low_34 (Length: 313)
Name: NF17625_low_34
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 74 - 298
Target Start/End: Original strand, 4759248 - 4759472
Alignment:
| Q |
74 |
ctttatgatttcttctctcacaatattttaaaagttttaatcattcattttatctttctctaccattcatgttagccaagcacacccaacaatttagact |
173 |
Q |
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| T |
4759248 |
ctttatgatttcttctctcacaatattttaaaagttttaatcattcattttatctttctctaccattcatgttagccaagcacacccaacaatttagact |
4759347 |
T |
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| Q |
174 |
ctttaaacatttttaagaacatattcaatcaatcacaacacaagttttcaaacttgaattaaacacagtttcacaaaagttaatactaatataaacatac |
273 |
Q |
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| T |
4759348 |
ctttaaacatttttaagaacatattcaatcaatcacaacacaagttttcaaacttgaattaaacacagtttcacaaaagttcatactaatataaacatac |
4759447 |
T |
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| Q |
274 |
atgattgaattgcttgcttcttgtt |
298 |
Q |
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| T |
4759448 |
attattgaattgcttgcttcttgtt |
4759472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 4759156 - 4759222
Alignment:
| Q |
4 |
atgaaaagacaacaaaagaataagaaccagcactaattcatgcaatttgaagttagtgcttcttatc |
70 |
Q |
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| T |
4759156 |
atgaaaagacaacaaaagaataagaaccagcactaattcatgcaatttgaagttagtgcttcttatc |
4759222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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