View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_low_35 (Length: 308)
Name: NF17625_low_35
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 20683795 - 20683522
Alignment:
| Q |
13 |
aatatctacaacctatagatttttaatacattttgcacttggtttacattatcctgtaacaatgctttggtgtaaaatattctcggtaagaaagctgaca |
112 |
Q |
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| T |
20683795 |
aatatctacaacctatagatttttaatacattttgcacttggtttacattatcctgtaacaatgctttggtgtaaaatactctcgggaagaaagctgaca |
20683696 |
T |
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| Q |
113 |
tagatggaagctaaagggtatgcaaaccttgaggaattttcttattaaggtaacataaataaacataaacaaattcataatatgttcatatatgcatg-- |
210 |
Q |
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| T |
20683695 |
tagatggaagctaaagggtatgcaaaccttgaggaattttcttatta-------ataaataaacataaacaaattcataatatgttcatatatgcatgaa |
20683603 |
T |
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| Q |
211 |
nnnnnnnnttatatggagacaagtttaatatgataatatggagaaaatcacaatataatctacctttattaaaaggatatt |
291 |
Q |
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| T |
20683602 |
aaaaaaaattatatggagacaagtttaataagataatatggagaaaatcacaatataatctacctttattaaaaggatatt |
20683522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 206
Target Start/End: Original strand, 20686856 - 20686996
Alignment:
| Q |
67 |
tgtaacaatgctttggtgtaaaatattc-tcggtaagaaagctgacatagatggaagctaaagggtatgcaaaccttgaggaattttcttattaaggtaa |
165 |
Q |
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| T |
20686856 |
tgtaacaacgttttggtgtaaaatactggttggaaacaaagttgatatggatgaaatctaaagtgtatgcaaactttgaggaccttccttattcatgtaa |
20686955 |
T |
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| Q |
166 |
cataaataaacataaacaaattcataatatgttcatatatg |
206 |
Q |
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| T |
20686956 |
catgaataaacataaacaagatcataatatgatcatatatg |
20686996 |
T |
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