View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_low_36 (Length: 296)
Name: NF17625_low_36
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 137 - 286
Target Start/End: Complemental strand, 6847907 - 6847758
Alignment:
| Q |
137 |
tgttaaactaatacagtaggtctcattttatttctttccaaatctacattataagagtgtaaaggtattctatatatacaagtaaaaaacctatttttac |
236 |
Q |
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| T |
6847907 |
tgttaaactgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttac |
6847808 |
T |
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| Q |
237 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatg |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6847807 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatg |
6847758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 137 - 286
Target Start/End: Complemental strand, 6843304 - 6843155
Alignment:
| Q |
137 |
tgttaaactaatacagtaggtctcattttatttctttccaaatctacattataagagtgtaaaggtattctatatatacaagtaaaaaacctatttttac |
236 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6843304 |
tgttaaactgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaatctatttttac |
6843205 |
T |
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| Q |
237 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatg |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6843204 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatg |
6843155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 137 - 286
Target Start/End: Complemental strand, 47805336 - 47805187
Alignment:
| Q |
137 |
tgttaaactaatacagtaggtctcattttatttctttccaaatctacattataagagtgtaaaggtattctatatatacaagtaaaaaacctatttttac |
236 |
Q |
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| T |
47805336 |
tgttaaactgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttac |
47805237 |
T |
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| Q |
237 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatg |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47805236 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatg |
47805187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 137 - 286
Target Start/End: Complemental strand, 47800754 - 47800605
Alignment:
| Q |
137 |
tgttaaactaatacagtaggtctcattttatttctttccaaatctacattataagagtgtaaaggtattctatatatacaagtaaaaaacctatttttac |
236 |
Q |
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|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47800754 |
tgttaaactgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttac |
47800655 |
T |
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| Q |
237 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatg |
286 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47800654 |
tagattgaaataatggtaaattatttttgattacaaatcaaatccctatg |
47800605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 136 - 286
Target Start/End: Complemental strand, 21264765 - 21264615
Alignment:
| Q |
136 |
ctgttaaactaatacagtaggtctcattttatttctttccaaatctacattataagagtgtaaaggtattctatatatacaagtaaaaaacctattttta |
235 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21264765 |
ctgtcaaactgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctattttta |
21264666 |
T |
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| Q |
236 |
ctagactgaaataatggtaaattatttctgattacaaatcaaatccctatg |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21264665 |
ctagactgaaataatggtaaattatttctgattacaaatcaaatccctatg |
21264615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 141 - 286
Target Start/End: Complemental strand, 21260179 - 21260034
Alignment:
| Q |
141 |
aaactaatacagtaggtctcattttatttctttccaaatctacattataagagtgtaaaggtattctatatatacaagtaaaaaacctatttttactaga |
240 |
Q |
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|
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21260179 |
aaactgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttactaga |
21260080 |
T |
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| Q |
241 |
ctgaaataatggtaaattatttctgattacaaatcaaatccctatg |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21260079 |
ctgaaataatggtaaattatttctgattacaaatcaaatccctatg |
21260034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 31014440 - 31014321
Alignment:
| Q |
17 |
attttcattatcatcttgttagttggctttactctaccatttgtcttattcgtgtattcttgaatttcttctaccaccgcgagctgaaatgctcttatat |
116 |
Q |
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| T |
31014440 |
attttcattatcatcttgttagttggctttact-taccatttgtcttattcgtctattcttaaatttcttctaccaccgcgagctgaaatgctcttatat |
31014342 |
T |
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| Q |
117 |
atctaaattaaggtgacaact |
137 |
Q |
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||||||||||||||||||||| |
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| T |
31014341 |
atctaaattaaggtgacaact |
31014321 |
T |
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