View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_low_38 (Length: 291)
Name: NF17625_low_38
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_38 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 8216682 - 8216953
Alignment:
| Q |
20 |
attcgttatgtaattccttctcccactcaaacaaaggtctacgccaagaaaaaatcaactaagaaaccccttctaccaaaacccacaactcactcacctt |
119 |
Q |
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| T |
8216682 |
attcgttatgtaattccttctcccactcaaacaaaggtctacgccaagaaaaaatcaactaagaaaccccttctaccaaaacccacaactcactcacctt |
8216781 |
T |
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| Q |
120 |
tgcttcttgattattagaaatggagtaaagtctagggaatttaatacttaatggaatggtatccctccaagcatcattccaaaaactcgagtttctccca |
219 |
Q |
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| T |
8216782 |
tgcttcttgattattagaaatggagtaaagtctagggaatttaatacttaatggaatggtatccctccaagcatcattccaaaaactcgagtttctccca |
8216881 |
T |
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| Q |
220 |
tttccgattttcctagccacctccctactgaatcaatcaactccaaccatatcctctagagacaaaagaccc |
291 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8216882 |
tttccgattttcctagccacctccctactgaaccaatcaactccaaccatatcctctagagacaaaagaccc |
8216953 |
T |
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