View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17625_low_4 (Length: 518)
Name: NF17625_low_4
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_4 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Complemental strand, 14003741 - 14003254
Alignment:
| Q |
19 |
attgacttctcttcttttgacgggatttcgtatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003741 |
attgacttctcttcttttgacgggatttcatatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctat |
14003642 |
T |
|
| Q |
119 |
tgccccggatatacttattctggaatctcatttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgattttttgaatgatcatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003641 |
tgccccggatatacttattctggaatctcatttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgattttttgaatgatcatt |
14003542 |
T |
|
| Q |
219 |
gtgttgctgagttgtctttgtttcttggtgatctgctctctatcaaccttggtaattgtcgcttgcgcagagtttccactttctttgctctcattaccaa |
318 |
Q |
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|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
14003541 |
gtgctgctgagttgtctttgtttcttggtgatctgctctctatcaaccttggtaattgtcgcttgctcacagtttccactttctttgctctcattaccaa |
14003442 |
T |
|
| Q |
319 |
ctgtccttcacttaccgagatcaatatgaatcgcacaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14003441 |
ctgtccttcacttaccgagatcaatatgaatcgcacaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaag |
14003342 |
T |
|
| Q |
419 |
tctctctttctggctagcacttgtttacaagatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14003341 |
tctctctttctggctagcacttgtttacaagatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca |
14003254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Original strand, 5767063 - 5767553
Alignment:
| Q |
19 |
attgacttctcttcttttgacgggatttcgtatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5767063 |
attgacttctcttcttttgacgggatttcgtatctcagatcaatttctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctat |
5767162 |
T |
|
| Q |
119 |
tgccccggatatacttattctggaatctcatttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgattttttgaatgatcatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
5767163 |
tgccccggatatacttattctggaatctcatttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatactgattttttgaatgatcatt |
5767262 |
T |
|
| Q |
219 |
gtgttgctgagttgtctttgtttcttggtgatctgctctctatcaaccttggtaattgtcgcttgcgcagagtttccactttctttgctctcattaccaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
5767263 |
gtgttgctgagttgtctttgtttcttggtgatctgctctctctcaaccttggtaattgtcgcttgctcacagtttccactttctttgctctcattaccaa |
5767362 |
T |
|
| Q |
319 |
ctgtccttcacttaccgagatcaatatgaatcgcacaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5767363 |
ctgtccttcacttaccgagatcaatatgaatcgcacaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaag |
5767462 |
T |
|
| Q |
419 |
tctctctttctggctag---cacttgtttacaagatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca |
506 |
Q |
| |
|
||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5767463 |
tctctctttctggctagcgccgcttgtttagaagatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca |
5767553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 17627610 - 17627655
Alignment:
| Q |
171 |
gtatccaacatttggatcttcaatatgctgattttttgaatgatca |
216 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||| |||| |
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|
| T |
17627610 |
gtatccaacatttggatcttcagtatgcttattttttgaataatca |
17627655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 19468064 - 19468138
Alignment:
| Q |
176 |
caacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgat |
250 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| | ||||| | ||||||||||||||||||||||| |
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|
| T |
19468064 |
caacatttggatcttcaacgtgctgggtttttgaatgatcactatgttgataagttgtctttgtttcttggtgat |
19468138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 277
Target Start/End: Original strand, 38266985 - 38267213
Alignment:
| Q |
50 |
atctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatc-tca |
148 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||||| ||||||||||||||| ||| |||| ||| | |||||| |||| || |||| ||||||||| | |
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| T |
38266985 |
atctccgatcacttcctttcctctattgcaatgcaaagtcttcctttgacgagccttggcctcggatattgcaccggctacactttctctggaatcttgc |
38267084 |
T |
|
| Q |
149 |
tttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtg |
248 |
Q |
| |
|
||||| ||||| | | |||||| ||||||||||| |||||| | |||||||| | | |||||| |||||| |||||||||||||||||| | |
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|
| T |
38267085 |
ttttttttatcctactgtccacgtatacaacatttggaccttcaagaaactgattttctcactgatcaccatgttgccgagttgtctttgtttcttcctc |
38267184 |
T |
|
| Q |
249 |
atctgctctctatcaaccttggtaattgt |
277 |
Q |
| |
|
||||| | ||||| |||||| || ||||| |
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|
| T |
38267185 |
atctggtgtctataaaccttagttattgt |
38267213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 196
Target Start/End: Complemental strand, 641580 - 641449
Alignment:
| Q |
65 |
ctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagt |
164 |
Q |
| |
|
|||||||| ||||||||| || | |||||||||| ||| ||||| ||| || ||||| |||| ||||||||| |||||||| | ||||||||| ||| |
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|
| T |
641580 |
ctctcctctattgcaatgaaaggccttcctttgacgagacttgtcctctgcaattgcaccggctatacttatgatggaatcttgtgtttgttatccaaga |
641481 |
T |
|
| Q |
165 |
cgaaacgtatccaacatttggatcttcaatat |
196 |
Q |
| |
|
||| || | |||||| |||||||||||||| |
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|
| T |
641480 |
gtaaatgtttacaacatctggatcttcaatat |
641449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 547460 - 547382
Alignment:
| Q |
172 |
tatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgat |
250 |
Q |
| |
|
|||||||||||| ||||||||| |||||| |||||||| | |||| |||| ||| ||||||||||||||||||||| |
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|
| T |
547460 |
tatccaacatttagatcttcaaaatgctgtttttttgactaatcaacatgttcttgacttgtctttgtttcttggtgat |
547382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 55908278 - 55908376
Alignment:
| Q |
170 |
cgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaacctt |
268 |
Q |
| |
|
||||| |||||||||||||||||| |||| ||| |||||||||| ||| || |||||||||||||||||||||||| || | ||||| |||||| |
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|
| T |
55908278 |
cgtatacaacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaacctt |
55908376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 1601073 - 1601013
Alignment:
| Q |
47 |
cgtatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttg |
107 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||||| ||||| || ||||||||||||||||| |
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|
| T |
1601073 |
cgtatctcggatcagttgctctcctctattgcaaaggaaaatcctcctttgaggaggcttg |
1601013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 193
Target Start/End: Original strand, 3438101 - 3438226
Alignment:
| Q |
68 |
tcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagtcga |
167 |
Q |
| |
|
||||| |||||||| | | ||||||||||||| |||||||| ||| | ||||| |||| |||| |||| ||| ||||| | | ||||||| |||| |
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|
| T |
3438101 |
tcctctattgcaattggaggtcttcctttgagaaggcttgtcctccacaattgcaccggctatagttatgctgaaatcttttctctgttatccaagtgtc |
3438200 |
T |
|
| Q |
168 |
aacgtatccaacatttggatcttcaa |
193 |
Q |
| |
|
|| |||| |||||||||||||||||| |
|
|
| T |
3438201 |
aatgtatacaacatttggatcttcaa |
3438226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 460 - 390
Alignment:
| Q |
176 |
caacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttgg |
246 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
460 |
caacatttggatcttcaaaatgccatgtttatgaatgatcatgatgttgcagagttgtctttgtttcttgg |
390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 1037214 - 1037312
Alignment:
| Q |
170 |
cgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaacctt |
268 |
Q |
| |
|
||||| |||||||||||||||||| |||| ||| |||||||||| ||| || |||||||||||||||||||||||| || | ||||| |||||| |
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|
| T |
1037214 |
cgtatacaacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaacctt |
1037312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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