View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_low_40 (Length: 284)
Name: NF17625_low_40
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 96 - 270
Target Start/End: Original strand, 34608543 - 34608717
Alignment:
| Q |
96 |
tcgactcgagagattattctctactattacgcagataaacacagatgatactcgatttacgaacattacatatgaaagcaacataaacgtacaaaatttg |
195 |
Q |
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| T |
34608543 |
tcgactcgagagattattctctatcattacgcagatacacacagatgatactcgatttacgaacattacatatgaaagcaacataaacgtacaaaatttg |
34608642 |
T |
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| Q |
196 |
tttccatgaacggaccacataaataaatattcagaaataaaaatatctgaacattattacctcacactctctctg |
270 |
Q |
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| T |
34608643 |
tttccatgaacggaccacataaataaatattcagaaataaaaatatctgaacattattacctcacactctctctg |
34608717 |
T |
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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 34608509 - 34608544
Alignment:
| Q |
18 |
atgcattattatgtgaaaatataattagcagtcatc |
53 |
Q |
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| T |
34608509 |
atgcattattatgtgaaaatataattagcaggcatc |
34608544 |
T |
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