View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_low_46 (Length: 271)
Name: NF17625_low_46
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 6364431 - 6364185
Alignment:
| Q |
19 |
ggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaagcagctcgtaaaggttataaactttatgttctatcttaacacttgagta |
118 |
Q |
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| T |
6364431 |
ggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaagcagctcgtaaaggttataa-ctttacgttctatcttaacacttgagta |
6364333 |
T |
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| Q |
119 |
tgttatattttaagaaattctggcaaaaattaagtgatatggtactaaaatgtgaaattgtattctacttgacaactaatgtttttatccctgatgttgt |
218 |
Q |
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| T |
6364332 |
tgttatattttaagaaattctggcaaaaattaagtgatatggtactaaaatgtgaaattgtattctacttgacaactaatgtttttatccctgatgttgt |
6364233 |
T |
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| Q |
219 |
ttactaagtctttttgttgatacaaatgtttactctgcctatgcttct |
266 |
Q |
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| T |
6364232 |
ttactaagtctttttgttgatacaaatgtttactctgcttatgattct |
6364185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 6275714 - 6275645
Alignment:
| Q |
19 |
ggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaagcagctcgtaaaggttata |
88 |
Q |
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| T |
6275714 |
ggaggatccaacaccttgccttaccctcgaagagggagaaccggcaggaaaccagctaagaaaggttata |
6275645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 6333124 - 6333053
Alignment:
| Q |
37 |
ccttaccctcgaagagggagaaccggcaggaaagcagctcgtaaaggttataaactttatgttctatcttaa |
108 |
Q |
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| T |
6333124 |
ccttaccctcgaagggggagaaccggcaggaaacatgctaaaaaaggtgataaactttatgctctatcttaa |
6333053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 6290450 - 6290391
Alignment:
| Q |
35 |
tcccttaccctcgaagagggagaaccggcaggaaagcagctcgtaaaggttataaacttt |
94 |
Q |
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| T |
6290450 |
tcccttaccctcgaaggggaagaaccggcagggaaccagctaagaaaggttataaacttt |
6290391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 6322557 - 6322505
Alignment:
| Q |
37 |
ccttaccctcgaagagggagaaccggcaggaaagcagctcgtaaaggttataa |
89 |
Q |
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| T |
6322557 |
ccttaccctcgaaggggcagaaccggcaggaaaccagctaaaaaaggttataa |
6322505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 6425248 - 6425192
Alignment:
| Q |
19 |
ggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaagcagct |
75 |
Q |
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| T |
6425248 |
ggaggatcgagcaccttgccttaccctcgaagggggagaacaggcagaaaaccagct |
6425192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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