View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17625_low_47 (Length: 267)
Name: NF17625_low_47
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_47 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 26)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 10979573 - 10979336
Alignment:
| Q |
12 |
atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10979573 |
atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactttgtccta |
10979474 |
T |
|
| Q |
112 |
cagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagc |
211 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10979473 |
cagataaaagctttgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagc |
10979374 |
T |
|
| Q |
212 |
tgatgtatatagttttgggatgttgttgatggagatgg |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10979373 |
tgatgtatatagttttgggatgttgttgatggagatgg |
10979336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 11011139 - 11010902
Alignment:
| Q |
12 |
atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
11011139 |
atgaaaattctacactttgatataaagcctcataacattcttcttgatgaaaatttcaatccaaaagtttctgattttggactagctagactttgtccta |
11011040 |
T |
|
| Q |
112 |
cagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11011039 |
cagataaaagcattgtgtcattaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggcacaatatcttacaaagc |
11010940 |
T |
|
| Q |
212 |
tgatgtatatagttttgggatgttgttgatggagatgg |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11010939 |
tgatgtatatagttttgggatgttgttgatggagatgg |
11010902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 11007977 - 11007740
Alignment:
| Q |
12 |
atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11007977 |
atgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactttgtccta |
11007878 |
T |
|
| Q |
112 |
cagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||| |
|
|
| T |
11007877 |
cagataaaagcattgtgtcattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaatgtcggcacgatatcttacaaagc |
11007778 |
T |
|
| Q |
212 |
tgatgtatatagttttgggatgttgttgatggagatgg |
249 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
11007777 |
tgatgtttatagttttgggatgttgttaatggagatgg |
11007740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 10974500 - 10974258
Alignment:
| Q |
7 |
gtgagatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctg |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10974500 |
gtgatatgaaaattctacactttgatataaagcctcataccatccttcttgatgaatatttcaatccaaaagtttctgattttggacttgctagactttg |
10974401 |
T |
|
| Q |
107 |
tcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttac |
206 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| || |||||||||||||| |||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
10974400 |
tcctacagataaaagcattgtgccattaactgctgcaagaggaacgattggatacatggcccctgaactgttctacagaaatattggcacaatatcttac |
10974301 |
T |
|
| Q |
207 |
aaagctgatgtatatagttttgggatgttgttgatggagatgg |
249 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
10974300 |
aaagctgatgtctatagctttgggatgttgttaatggagatgg |
10974258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 11033430 - 11033193
Alignment:
| Q |
12 |
atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
11033430 |
atgaaaattctacactttgacataaagcctcataacatccttcttgatgagaatttcaacccaaaagtttctgattttggactagctagactttgtccta |
11033331 |
T |
|
| Q |
112 |
cagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagc |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
11033330 |
cagataaaagcattgtcacattaactgcagcaagaggaaccattggatatatggcccctgaactattctaccgaaatgtcggcacaatatcttacaaagc |
11033231 |
T |
|
| Q |
212 |
tgatgtatatagttttgggatgttgttgatggagatgg |
249 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11033230 |
tgatgtttatagttttgggatgttgttgatggagatgg |
11033193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 11004883 - 11005120
Alignment:
| Q |
12 |
atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| | | ||||| |
|
|
| T |
11004883 |
atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggattagctagggtttctccta |
11004982 |
T |
|
| Q |
112 |
cagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagc |
211 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
11004983 |
cagacaaaagcattgtgtccttaactgcagcaagaggaaccattggatacatggcccctgaactattctacagaaatgtcggcacaatatctcacaaagc |
11005082 |
T |
|
| Q |
212 |
tgatgtatatagttttgggatgttgttgatggagatgg |
249 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
11005083 |
tgatgtctatagctttgggatgttgttgatggagatgg |
11005120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 11028468 - 11028703
Alignment:
| Q |
12 |
atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
11028468 |
atgaaaattctacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctagactttgtccta |
11028567 |
T |
|
| Q |
112 |
cagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagc |
211 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11028568 |
caggtaatagcattgtgtcattaactgcagcaagaagaaccattggatacatggcccctgaactattctatagaaatgttggcacaatatcttacaaagc |
11028667 |
T |
|
| Q |
212 |
tgatgtatatagttttgggatgttgttgatggagat |
247 |
Q |
| |
|
|||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
11028668 |
tgatgtctatagctttgggatgttgttaatggagat |
11028703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 10914838 - 10914601
Alignment:
| Q |
12 |
atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || | ||||| |
|
|
| T |
10914838 |
atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagccaggctttctccta |
10914739 |
T |
|
| Q |
112 |
cagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||| ||||||| |||||||| |||||||||||| ||||||| |
|
|
| T |
10914738 |
cagataaaagcattgtgtcattaactgcagcaagaggaaccatcggatatatggcccctgaattattctatagaaatgtcggcacaatatctcacaaagc |
10914639 |
T |
|
| Q |
212 |
tgatgtatatagttttgggatgttgttgatggagatgg |
249 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
10914638 |
tgatgtatatagctttgggatgttgttaatggagatgg |
10914601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 10903674 - 10903441
Alignment:
| Q |
13 |
tgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctac |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | |||||| |
|
|
| T |
10903674 |
tgaaaattctacactttgatataaagcctcataacattcttcttgatgaaagtttcaatccaaaagtttctgattttggacttgccagactttctcctac |
10903575 |
T |
|
| Q |
113 |
agataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
10903574 |
agataaaagcattgtgtcattaactgcagcaagaggaaccattggata---tgcccctgaacttttctacagaaatgttggaatgatatcttacaaagct |
10903478 |
T |
|
| Q |
213 |
gatgtatatagttttgggatgttgttgatggagatgg |
249 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
10903477 |
gatgtctatagctttgggatgttgttaatggagatgg |
10903441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 120 - 249
Target Start/End: Complemental strand, 10901730 - 10901601
Alignment:
| Q |
120 |
agcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtat |
219 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| |||||||||||||||| |||||||||||| ||||||||||||| | |
|
|
| T |
10901730 |
agcattgtttcattaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctcacaaagctgatgtct |
10901631 |
T |
|
| Q |
220 |
atagttttgggatgttgttgatggagatgg |
249 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
|
|
| T |
10901630 |
atagttttggaatgttgttgatggagatgg |
10901601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 249
Target Start/End: Complemental strand, 9320136 - 9319914
Alignment:
| Q |
27 |
tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg |
126 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| || || | || |||||||| || ||||| ||||||| || | ||||| || | ||||||| |
|
|
| T |
9320136 |
tttgatatcaagccccataacatccttcttgatgagaactttatccccaaagtttcagactttggtcttgctaagctttatcctaatgagattagcattg |
9320037 |
T |
|
| Q |
127 |
tgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttt |
226 |
Q |
| |
|
| | ||||||||||||||||| || |||||||| |||||||||||| | ||||||| |||| |||| | |||| ||||| |||||||||||||| || |
|
|
| T |
9320036 |
tcactttaactgcagcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagctt |
9319937 |
T |
|
| Q |
227 |
tgggatgttgttgatggagatgg |
249 |
Q |
| |
|
|| ||| | |||||||| |||| |
|
|
| T |
9319936 |
cggaatgcttttgatggaaatgg |
9319914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 9453700 - 9453902
Alignment:
| Q |
27 |
tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg |
126 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| |||||||||| || |||||||| |||||||| ||||| | || | ||||| || || ||||||| |
|
|
| T |
9453700 |
tttgatattaagcctcacaacatccttcttgacgaaaatttcatccctaaagtttcagattttggtcttgcaaagctttatcctattgacaatagcattg |
9453799 |
T |
|
| Q |
127 |
tgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttt |
226 |
Q |
| |
|
| | || || ||||||||||| || ||||| ||||||||||||||| | |||||| |||| |||| | |||||| |||| || ||||| |||||||| |
|
|
| T |
9453800 |
tcgctttgacagcagcaagaggaacaattggttacatggctcctgaattgttctaccaaaatattgggagaatatcacacaaggccgatgtgtatagttt |
9453899 |
T |
|
| Q |
227 |
tgg |
229 |
Q |
| |
|
||| |
|
|
| T |
9453900 |
tgg |
9453902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 249
Target Start/End: Complemental strand, 8964746 - 8964524
Alignment:
| Q |
27 |
tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg |
126 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||||| |||||||| ||||| |||||| | |||| || | |||| ||| || ||||||| |
|
|
| T |
8964746 |
tttgatattaagcctcacaacatccttcttgatgagaatttcaccccaaaagtctctgactttggattggctaagctatatcctgtagagaatagcattg |
8964647 |
T |
|
| Q |
127 |
tgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttt |
226 |
Q |
| |
|
| || | || || |||||||| ||||||||||| |||||||| ||| | ||||| | |||| |||| | | || || || |||||||| ||||| || |
|
|
| T |
8964646 |
tcacaatgacagcggcaagaggtaccattggatatatggctccagaattgttctataaaaatattgggggagtgtcctataaggctgatgtttatagctt |
8964547 |
T |
|
| Q |
227 |
tgggatgttgttgatggagatgg |
249 |
Q |
| |
|
||||||| | ||||||||||||| |
|
|
| T |
8964546 |
tgggatgcttttgatggagatgg |
8964524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 8999912 - 8999675
Alignment:
| Q |
12 |
atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtccta |
111 |
Q |
| |
|
||||| ||| |||| |||||||| |||||||| |||||||||||||||||||| |||| |||||||| ||||| || ||| | |||| || | ||| |
|
|
| T |
8999912 |
atgaagattttacattttgatatcaagcctcacaacatccttcttgatgaaaacttcacaccaaaagtctctgacttcggattggctaagctatatcccg |
8999813 |
T |
|
| Q |
112 |
cagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagc |
211 |
Q |
| |
|
|| || |||||||| || | ||||| |||||||| ||||||||||| |||||||| ||| | ||||| | |||| |||| | | ||||| || || |
|
|
| T |
8999812 |
tggagaatagcattgtcacaatgactgcggcaagaggtaccattggatatatggctccagaattgttctataaaaatattgggggagtgtcttataaggc |
8999713 |
T |
|
| Q |
212 |
tgatgtatatagttttgggatgttgttgatggagatgg |
249 |
Q |
| |
|
|||||| ||||| ||||||||| | ||||||||||||| |
|
|
| T |
8999712 |
tgatgtttatagctttgggatgcttttgatggagatgg |
8999675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 244
Target Start/End: Complemental strand, 9350453 - 9350236
Alignment:
| Q |
27 |
tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg |
126 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| || || | || |||||||| || ||||| ||||||| || | ||||| || | ||||||| |
|
|
| T |
9350453 |
tttgatatcaagccccataacatccttcttgatgagaactttatccccaaagtttcagactttggtcttgctaagctttatcctaatgagattagcattg |
9350354 |
T |
|
| Q |
127 |
tgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttt |
226 |
Q |
| |
|
| | ||||||||||||||||| || |||||||| ||||||||||| | ||||||| |||| |||| | |||| ||||| |||||||||||||| || |
|
|
| T |
9350353 |
tcactttaactgcagcaagaggaacaattggatatatggctcctgagttgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagctt |
9350254 |
T |
|
| Q |
227 |
tgggatgttgttgatgga |
244 |
Q |
| |
|
|| ||| | |||||||| |
|
|
| T |
9350253 |
cggaatgcttttgatgga |
9350236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 27 - 249
Target Start/End: Original strand, 9318166 - 9318388
Alignment:
| Q |
27 |
tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg |
126 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| || || | ||| |||||||| || ||||| || || | || | ||| | || | ||||||| |
|
|
| T |
9318166 |
tttgatatcaagccccataacatccttcttgatgagaactttattcccaaagtttcagactttggtctggcaaagctttatccaaatgacattagcattg |
9318265 |
T |
|
| Q |
127 |
tgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttt |
226 |
Q |
| |
|
| | ||||||||||| ||||| || ||||||||||||||||||||| | ||||||| |||| |||| | |||| ||||| || ||||||||||| || |
|
|
| T |
9318266 |
tcactttaactgcagctagaggaacaattggatacatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggccgatgtatatagctt |
9318365 |
T |
|
| Q |
227 |
tgggatgttgttgatggagatgg |
249 |
Q |
| |
|
||| ||| | |||||||| |||| |
|
|
| T |
9318366 |
tggaatgcttttgatggaaatgg |
9318388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 9432713 - 9432915
Alignment:
| Q |
27 |
tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg |
126 |
Q |
| |
|
|||||||| |||||||| ||||||||||| || |||||||||| || |||||||| || ||||| ||||| | || | ||||| || |||||||||| |
|
|
| T |
9432713 |
tttgatattaagcctcacaacatccttctggacgaaaatttcatccctaaagtttcggactttggtcttgcaaagctttatcctattgacaaaagcattg |
9432812 |
T |
|
| Q |
127 |
tgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttt |
226 |
Q |
| |
|
| || || ||||||||||| || ||||| ||||||||||||||| | |||||| |||| |||| | |||||| |||| || ||||| |||||||| |
|
|
| T |
9432813 |
ccactttgacggcagcaagaggaacaattggttacatggctcctgaattgttctaccaaaatattgggagaatatcacacaaggccgatgtgtatagttt |
9432912 |
T |
|
| Q |
227 |
tgg |
229 |
Q |
| |
|
||| |
|
|
| T |
9432913 |
tgg |
9432915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 249
Target Start/End: Original strand, 9082523 - 9082637
Alignment:
| Q |
135 |
actgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgggatgt |
234 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||||| ||||||||| |||| | || | | || ||||| |||||||| ||||||||||||||| |
|
|
| T |
9082523 |
actgcagcaagaggtacaattggatatatggctcctgagttattctacaaaaatatagggggagtgtcgtacaaggctgatgtttatagttttgggatgc |
9082622 |
T |
|
| Q |
235 |
tgttgatggagatgg |
249 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
9082623 |
ttttgatggagatgg |
9082637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 9233915 - 9234157
Alignment:
| Q |
7 |
gtgagatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctg |
106 |
Q |
| |
|
|||| ||| |||||||||| |||||||| ||||||||||| || ||||| || ||| ||||| |||||| ||||| |||||||||||||| | || | |
|
|
| T |
9233915 |
gtgatatgcaaattctacattttgatatcaagcctcataatattcttctagacgaagatttcgttccaaaggtttcggattttggacttgcaaagcttta |
9234014 |
T |
|
| Q |
107 |
tcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttac |
206 |
Q |
| |
|
||| | | |||||||| | |||||||| |||||||| || | || ||||||||||||||| | ||||||| |||| |||| | | || ||| |
|
|
| T |
9234015 |
ccctgtgaacgatagcattgttccgttaactgcggcaagaggaactttgggttacatggctcctgaattgttctacaaaaatattggtggagtgtcgtac |
9234114 |
T |
|
| Q |
207 |
aaagctgatgtatatagttttgggatgttgttgatggagatgg |
249 |
Q |
| |
|
|||||||||||||| |||||||| ||| | |||||||| |||| |
|
|
| T |
9234115 |
aaagctgatgtatacagttttggaatgcttttgatggaaatgg |
9234157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 9384479 - 9384237
Alignment:
| Q |
7 |
gtgagatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctg |
106 |
Q |
| |
|
|||| ||| |||||||||| |||||||| ||||||||||| || ||||| || ||| | || |||||| ||||| |||||||||||||| | || | |
|
|
| T |
9384479 |
gtgatatgcaaattctacattttgatatcaagcctcataatattcttctagacgaagagtttgttccaaaggtttcggattttggacttgcaaagctata |
9384380 |
T |
|
| Q |
107 |
tcctacagataaaagcattgtgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttac |
206 |
Q |
| |
|
|||| | | |||||||| | |||||||| |||||||| || | || ||||||||||||||||| ||||||| |||| |||| | | |||||| |
|
|
| T |
9384379 |
tcctgtgaacgatagcattgttaccttaactgcggcaagaggaactttgggttacatggctcctgaactgttctacaaaaatattggtggagtgtcttac |
9384280 |
T |
|
| Q |
207 |
aaagctgatgtatatagttttgggatgttgttgatggagatgg |
249 |
Q |
| |
|
|| |||||||||||||| ||||| ||| | |||||||| |||| |
|
|
| T |
9384279 |
aaggctgatgtatatagctttggaatgcttttgatggaaatgg |
9384237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 9399866 - 9399664
Alignment:
| Q |
27 |
tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg |
126 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| |||||||||| || |||||||| || ||||| ||||| | || | ||||| || |||||||||| |
|
|
| T |
9399866 |
tttgatattaagcctcacaacatccttcttgacgaaaatttcatccctaaagtttcggactttggtcttgcaaagctttatcctattgacaaaagcattg |
9399767 |
T |
|
| Q |
127 |
tgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttt |
226 |
Q |
| |
|
| || | ||||||||||| || ||||| ||||||||||||||||| |||| | |||| |||| |||||| || || |||||||| ||||| || |
|
|
| T |
9399766 |
ccactttgatggcagcaagaggaacaattggttacatggctcctgaactgttcttccaaaatattgggggaatatcatataaggctgatgtgtatagctt |
9399667 |
T |
|
| Q |
227 |
tgg |
229 |
Q |
| |
|
||| |
|
|
| T |
9399666 |
tgg |
9399664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 249
Target Start/End: Original strand, 8873944 - 8874166
Alignment:
| Q |
27 |
tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg |
126 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| || || | ||| ||||| ||||| |||||| | |||| || | |||| || || ||||||| |
|
|
| T |
8873944 |
tttgatattaagcctcacaacatccttcttgatgagaactttactccgaaagtctctgactttggattggctaagctatatcctgtggagaatagcattg |
8874043 |
T |
|
| Q |
127 |
tgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttt |
226 |
Q |
| |
|
| || | ||||| |||||||| ||||||||||| |||||||| ||| | || || | |||| |||| | | || || || |||||||| |||||||| |
|
|
| T |
8874044 |
tcacaatgactgcggcaagaggtaccattggatatatggctccagaattgttttataaaaatattggtggagtgtcctataaggctgatgtttatagttt |
8874143 |
T |
|
| Q |
227 |
tgggatgttgttgatggagatgg |
249 |
Q |
| |
|
||||||| | ||||||| ||||| |
|
|
| T |
8874144 |
tgggatgcttttgatggtgatgg |
8874166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 249
Target Start/End: Original strand, 9096793 - 9096907
Alignment:
| Q |
135 |
actgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgggatgt |
234 |
Q |
| |
|
||||| |||||||| || |||||||| |||||||| ||| | ||||||| |||| |||| | | || || ||||||||||| ||||| ||||||||| |
|
|
| T |
9096793 |
actgctgcaagaggtacaattggatatatggctccagaattgttctacaaaaatattgggggagtttcctataaagctgatgtttatagctttgggatgc |
9096892 |
T |
|
| Q |
235 |
tgttgatggagatgg |
249 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
9096893 |
ttttgatggagatgg |
9096907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 249
Target Start/End: Complemental strand, 9488784 - 9488562
Alignment:
| Q |
27 |
tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg |
126 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| | ||| |||| |||||| ||||| |||||| |||| || | | | ||| || || || ||||||| |
|
|
| T |
9488784 |
tttgacataaagcctcataacattcttcttgacgtaaacttcactccaaaggtttcagattttagactagcaaagttatatccaacggacaatagcattg |
9488685 |
T |
|
| Q |
127 |
tgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttt |
226 |
Q |
| |
|
|||| | || || |||||||| || || ||||||||||| || ||| | ||||| | ||| |||| | |||| |||||||| ||||| ||||| || |
|
|
| T |
9488684 |
tgtctcttacagctgcaagaggaactatgggatacatggcaccagaattgttctataagaatattggaggagtatcgtacaaagcagatgtttatagctt |
9488585 |
T |
|
| Q |
227 |
tgggatgttgttgatggagatgg |
249 |
Q |
| |
|
||| |||||||| ||||| |||| |
|
|
| T |
9488584 |
tggaatgttgttaatggaaatgg |
9488562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 9255009 - 9255106
Alignment:
| Q |
132 |
ttaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgg |
229 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||||||||| | |||||| |||| |||| | |||| ||||| || ||||||||||| ||||| |
|
|
| T |
9255009 |
ttaaccgcagcaagggggacaattggatacatggctcctgaattgttctaccaaaatattggaggagtatcgtacaaggccgatgtatatagctttgg |
9255106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 9464352 - 9464285
Alignment:
| Q |
27 |
tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggact |
94 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| | ||| |||| |||||| ||||| |||||| |||| |
|
|
| T |
9464352 |
tttgacataaagcctcataacattcttcttgacgtaaacttcactccaaaggtttcggatttttgact |
9464285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 193
Target Start/End: Original strand, 15927072 - 15927238
Alignment:
| Q |
27 |
tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctacagataaaagcattg |
126 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||| || || | || |||||||| || ||||| ||||| | || | ||||| || | || |||| |
|
|
| T |
15927072 |
tttgacatcaagccccataacatccttcttgatgagaactttatccccaaagtttccgactttggtcttgcaaagctttatcctaatgagattagtattg |
15927171 |
T |
|
| Q |
127 |
tgtcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttgg |
193 |
Q |
| |
|
| | ||||||||||||||||| || ||||||||||||||||||||| ||||||||| |||| |||| |
|
|
| T |
15927172 |
tcactttaactgcagcaagaggaacgattggatacatggctcctgaattattctacaaaaatattgg |
15927238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 249
Target Start/End: Complemental strand, 9159721 - 9159604
Alignment:
| Q |
132 |
ttaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttggga |
231 |
Q |
| |
|
||||||||||||||||| || ||||| || |||||||| || | ||||||| |||| |||| | |||| ||||| |||||||| ||||||||||| | |
|
|
| T |
9159721 |
ttaactgcagcaagaggaacaattggttatatggctcccgagttgttctacaaaaatattggtggagtatcatacaaggctgatgtttatagttttggaa |
9159622 |
T |
|
| Q |
232 |
tgttgttgatggagatgg |
249 |
Q |
| |
|
|| | |||||||| |||| |
|
|
| T |
9159621 |
tgcttttgatggaaatgg |
9159604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 40225285 - 40225245
Alignment:
| Q |
57 |
gatgaaaatttcaatccaaaagtttctgattttggacttgc |
97 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
40225285 |
gatgaaaatttcaatccaaaactctctgattttggacttgc |
40225245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 27692659 - 27692614
Alignment:
| Q |
22 |
tacactttgatataaagcctcataacatccttcttgatgaaaattt |
67 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| || ||||| |
|
|
| T |
27692659 |
tacactttgatataaaacctcataacattcttcttgacgagaattt |
27692614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 7945893 - 7945933
Alignment:
| Q |
57 |
gatgaaaatttcaatccaaaagtttctgattttggacttgc |
97 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
7945893 |
gatgaaaatttcaatccaaagctttctgattttggtcttgc |
7945933 |
T |
|
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