View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_low_48 (Length: 267)
Name: NF17625_low_48
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 3754929 - 3755190
Alignment:
| Q |
1 |
catgacggaccatgtctgactaagtagcgattaaaactcaatatgttatctaccatttagactatttcgtgaaattggaagtaaaaacaagaccacaagt |
100 |
Q |
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| T |
3754929 |
catgacggaccatgtctgactaagtagcgattaaaactcaatatgttatctaccatttagactatttcgtgaaattggaagtaaaaacaagaccacaagt |
3755028 |
T |
|
| Q |
101 |
ttgaatattcctattcctttgcccaattgataaacttgtttaaattcttacccccttcggctttgttctctgccaccatttccattaatttcgaagatct |
200 |
Q |
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| T |
3755029 |
ttgaatattcctattcctttgcccaattgataaacttgtttaaattcttaccccctttggctttgttctccgccaccatttccattaattttgaagatct |
3755128 |
T |
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| Q |
201 |
ttctttaattccttcatcttcaagtaattcatccaccttcttctttatctctccctatgtta |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3755129 |
ttctttaattccttcatcttcaagtaattcatccaccttcttctttatctctccctttgtta |
3755190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 3767772 - 3767828
Alignment:
| Q |
196 |
gatctttctttaattccttcatcttcaagtaattcatccaccttcttctttatctct |
252 |
Q |
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|||||||||||||| ||| ||||| ||| |||| ||||||||||||||||||||| |
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| T |
3767772 |
gatctttctttaatatcttgatcttgaagcaattgttccaccttcttctttatctct |
3767828 |
T |
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