View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17625_low_5 (Length: 517)

Name: NF17625_low_5
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17625_low_5
NF17625_low_5
[»] chr3 (11 HSPs)
chr3 (55-238)||(30533681-30533864)
chr3 (300-489)||(30533891-30534080)
chr3 (368-487)||(30494986-30495100)
chr3 (162-208)||(48956312-48956358)
chr3 (314-364)||(7546078-7546128)
chr3 (310-364)||(33448500-33448554)
chr3 (316-364)||(2652342-2652390)
chr3 (314-362)||(3540260-3540308)
chr3 (314-365)||(33450061-33450112)
chr3 (313-368)||(40517549-40517604)
chr3 (318-365)||(53101188-53101235)
[»] chr1 (12 HSPs)
chr1 (306-366)||(2094381-2094441)
chr1 (55-107)||(52653668-52653722)
chr1 (309-366)||(35392126-35392183)
chr1 (309-364)||(20447024-20447079)
chr1 (309-364)||(20532787-20532842)
chr1 (310-366)||(3792559-3792615)
chr1 (309-365)||(5119053-5119109)
chr1 (310-366)||(5602943-5602999)
chr1 (310-365)||(37260936-37260991)
chr1 (300-342)||(42883767-42883809)
chr1 (316-365)||(37259311-37259360)
chr1 (317-365)||(42883108-42883156)
[»] chr8 (7 HSPs)
chr8 (302-367)||(37687327-37687392)
chr8 (306-365)||(35841397-35841456)
chr8 (320-365)||(26229071-26229116)
chr8 (320-366)||(4640828-4640874)
chr8 (318-364)||(33228914-33228960)
chr8 (317-366)||(14087874-14087923)
chr8 (318-367)||(43641004-43641053)
[»] chr7 (8 HSPs)
chr7 (308-365)||(26009369-26009426)
chr7 (314-366)||(36325618-36325670)
chr7 (309-365)||(28138759-28138815)
chr7 (307-367)||(41957586-41957646)
chr7 (314-361)||(23344444-23344491)
chr7 (310-365)||(25428731-25428786)
chr7 (310-365)||(42548161-42548216)
chr7 (309-367)||(36326274-36326332)
[»] chr5 (8 HSPs)
chr5 (309-366)||(3458013-3458070)
chr5 (314-364)||(34708774-34708824)
chr5 (310-366)||(25787864-25787920)
chr5 (307-365)||(7336104-7336162)
chr5 (309-359)||(16879895-16879945)
chr5 (310-339)||(1975325-1975354)
chr5 (317-366)||(3758921-3758970)
chr5 (310-362)||(16879204-16879256)
[»] chr6 (6 HSPs)
chr6 (309-365)||(806545-806601)
chr6 (317-362)||(7203436-7203481)
chr6 (300-353)||(14830404-14830457)
chr6 (309-365)||(14153354-14153410)
chr6 (301-365)||(14431488-14431552)
chr6 (310-366)||(35060918-35060974)
[»] chr4 (5 HSPs)
chr4 (310-365)||(36217870-36217925)
chr4 (314-365)||(37576543-37576594)
chr4 (309-374)||(38676931-38676995)
chr4 (306-365)||(38677681-38677740)
chr4 (309-337)||(42099548-42099576)
[»] scaffold0037 (1 HSPs)
scaffold0037 (310-362)||(38321-38373)
[»] chr2 (7 HSPs)
chr2 (314-366)||(5037298-5037350)
chr2 (309-365)||(19984725-19984781)
chr2 (309-377)||(22788007-22788075)
chr2 (310-366)||(25389873-25389929)
chr2 (317-362)||(9539108-9539153)
chr2 (310-366)||(494987-495043)
chr2 (310-366)||(18387240-18387296)
[»] scaffold0262 (1 HSPs)
scaffold0262 (302-365)||(8384-8447)
[»] scaffold0163 (1 HSPs)
scaffold0163 (310-365)||(35776-35831)
[»] scaffold0016 (1 HSPs)
scaffold0016 (310-365)||(69722-69778)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 6e-97; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 55 - 238
Target Start/End: Original strand, 30533681 - 30533864
Alignment:
Q  55 cattcaaatgactcaaccccatacatgtaagatgctaaaatactccttcacaatcatgcaaaacatggtgatgacacgttgccttgtaaaagatccacta 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30533681 cattcaaatgactcaaccccatacatgtaagatgctaaaatactccttcacaatcatgcaaaacatggtgatgacacgttgccttataaaagatccacta 30533780  T
Q  155 atcaaagcaaagcaaagaaggaaaatggaggagatgaaggaagaagcagcctttgcaatagtggtgtgaaagtgagaaagaaaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30533781 atcaaagcaaagcaaagaaggaaaatggaggagatgaaggaagaagcagcctttgcaatagtggtgtgaaagtgagaaagaaaa 30533864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 300 - 489
Target Start/End: Original strand, 30533891 - 30534080
Alignment:
Q  300 gtgtaaggatattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattcatagaattttatgcacgccatatacaagatgtta 399  Q
    ||||| || ||||||||| |||||||||| ||||||||||||| ||| ||||||||||||||||||| ||||||||| |||| |||||||||||||||||    
T  30533891 gtgtaggggtattttggatatttactttgaaaatgagcaaaaccgttcgagtaaagagcagaattcaaagaattttacgcacaccatatacaagatgtta 30533990  T
Q  400 ttcgaaggaattttataaattatgtatttccatagcgtacggacttgcatcttatcttactagtataatgaagagtatttgttttcttat 489  Q
    |  ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  30533991 tctgaaggaattttataaattatgtacttccatagcgtacggatttgcatcttatcttactagtataataaagagtatttgttttcttat 30534080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 368 - 487
Target Start/End: Original strand, 30494986 - 30495100
Alignment:
Q  368 agaattttatgcacgccatatacaagatgttattcgaaggaattttataaattatgtatttccatagcgtacggacttgcatcttatcttactagtataa 467  Q
    ||||||||| |||| ||||||| |||||||||| ||||||||||||||||||||| || |||||||||||||| ||||||     |||||||||||||||    
T  30494986 agaattttacgcacaccatataaaagatgttatccgaaggaattttataaattatatacttccatagcgtacgaacttgc-----atcttactagtataa 30495080  T
Q  468 tgaagagtatttgttttctt 487  Q
    ||||||||||||||||||||    
T  30495081 tgaagagtatttgttttctt 30495100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 48956312 - 48956358
Alignment:
Q  162 caaagcaaagaaggaaaatggaggagatgaaggaagaagcagccttt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  48956312 caaagcaaagaaggaaaatggaggagatgaaggaagaagcagccttt 48956358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 364
Target Start/End: Complemental strand, 7546128 - 7546078
Alignment:
Q  314 tggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaatt 364  Q
    |||||||||||||||| || |||| |||||||||| |||||||||||||||    
T  7546128 tggacatttactttgggaacgagcgaaacagtttgggtaaagagcagaatt 7546078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 33448554 - 33448500
Alignment:
Q  310 attttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaatt 364  Q
    |||||| |||||| |||| ||||||||||||||||||||  ||||||||||||||    
T  33448554 attttgaacattttctttagaaatgagcaaaacagtttggataaagagcagaatt 33448500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 2652390 - 2652342
Alignment:
Q  316 gacatttactttggaaatgagcaaaacagtttgagtaaagagcagaatt 364  Q
    ||||||||||||||||| ||||||||||||||| ||||| || ||||||    
T  2652390 gacatttactttggaaacgagcaaaacagtttgggtaaaaagtagaatt 2652342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 3540260 - 3540308
Alignment:
Q  314 tggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaa 362  Q
    |||||||||||||||| || ||||||||||||||  |||||||||||||    
T  3540260 tggacatttactttgggaacgagcaaaacagttttggtaaagagcagaa 3540308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 365
Target Start/End: Original strand, 33450061 - 33450112
Alignment:
Q  314 tggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    |||||||||| ||||  |||||||||||||||||| |||| |||||||||||    
T  33450061 tggacatttattttgagaatgagcaaaacagtttgggtaatgagcagaattc 33450112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 368
Target Start/End: Original strand, 40517549 - 40517604
Alignment:
Q  313 ttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattcata 368  Q
    |||| |||||||||| | ||||||| |||| ||||| |||||||||||||||||||    
T  40517549 ttggtcatttactttaggaatgagcgaaaccgtttgggtaaagagcagaattcata 40517604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 53101188 - 53101235
Alignment:
Q  318 catttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    ||||||||||||||||||||||||  ||||| |||||||| |||||||    
T  53101188 catttactttggaaatgagcaaaaatgtttgggtaaagagtagaattc 53101235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 306 - 366
Target Start/End: Original strand, 2094381 - 2094441
Alignment:
Q  306 ggatattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattca 366  Q
    ||||||||| ||||||||||||||||||||||| |||| |||| |||| ||||||||||||    
T  2094381 ggatattttagacatttactttggaaatgagcagaacaatttgggtaatgagcagaattca 2094441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 52653722 - 52653668
Alignment:
Q  55 cattcaaatgactcaacc--ccatacatgtaagatgctaaaatactccttcacaa 107  Q
    ||||||||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  52653722 cattcaaatgactcaaccacccatacatgtaaaatgctaaaatactccttcacaa 52653668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 35392126 - 35392183
Alignment:
Q  309 tattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattca 366  Q
    ||||||| ||||||||||||| ||||||||||||| |||| |||||||||||| ||||    
T  35392126 tattttgaacatttactttgggaatgagcaaaacaatttgggtaaagagcagagttca 35392183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 20447079 - 20447024
Alignment:
Q  309 tattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaatt 364  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||| |||| ||||    
T  20447079 tattttggacatttactttgagaatgagcaaaacagtttgggtaaaaagcataatt 20447024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 20532842 - 20532787
Alignment:
Q  309 tattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaatt 364  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||| |||| ||||    
T  20532842 tattttggacatttactttgagaatgagcaaaacagtttgggtaaaaagcataatt 20532787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 366
Target Start/End: Complemental strand, 3792615 - 3792559
Alignment:
Q  310 attttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattca 366  Q
    ||||||||| |||||||||||||||||| ||||  |||| |||| ||||||||||||    
T  3792615 attttggacttttactttggaaatgagcgaaactatttgggtaatgagcagaattca 3792559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 5119053 - 5119109
Alignment:
Q  309 tattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    |||||| |||||||||||| | |||||||||||| |||||  |||||||||||||||    
T  5119053 tattttagacatttactttaggaatgagcaaaaccgtttggataaagagcagaattc 5119109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 366
Target Start/End: Complemental strand, 5602999 - 5602943
Alignment:
Q  310 attttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattca 366  Q
    ||||||| |||||||||||| |||||||||| |  |||| |||||||||||||||||    
T  5602999 attttggtcatttactttgggaatgagcaaatccatttgggtaaagagcagaattca 5602943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 365
Target Start/End: Original strand, 37260936 - 37260991
Alignment:
Q  310 attttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    |||||||||||||||||||  |||| ||||||| ||||| |||||||||| |||||    
T  37260936 attttggacatttactttgagaatgggcaaaaccgtttgggtaaagagcataattc 37260991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 42883767 - 42883809
Alignment:
Q  300 gtgtaaggatattttggacatttactttggaaatgagcaaaac 342  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||    
T  42883767 gtgtagggatattttggacatttattttagaaatgagcaaaac 42883809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 37259360 - 37259311
Alignment:
Q  316 gacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    ||||||||||||||||||||||||||| ||||   ||||||||| |||||    
T  37259360 gacatttactttggaaatgagcaaaaccgtttagataaagagcataattc 37259311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 42883156 - 42883108
Alignment:
Q  317 acatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    ||||||||||| |  ||||||||||| ||||| ||||||||||||||||    
T  42883156 acatttactttaggtatgagcaaaactgtttgggtaaagagcagaattc 42883108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 37687327 - 37687392
Alignment:
Q  302 gtaaggatattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattcat 367  Q
    ||||||||||||||||||||||||||||||||||||  |||  |||| ||||  ||||||||||||    
T  37687327 gtaaggatattttggacatttactttggaaatgagcggaaccatttgggtaataagcagaattcat 37687392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 35841456 - 35841397
Alignment:
Q  306 ggatattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    ||||||||||||||||||||||  ||||||||| ||| ||||  ||||||||||||||||    
T  35841456 ggatattttggacatttactttaaaaatgagcacaactgttttggtaaagagcagaattc 35841397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 26229071 - 26229116
Alignment:
Q  320 tttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||||    
T  26229071 tttactttgggaatgaacaaaacagtttgggtaaagagcagaattc 26229116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 4640828 - 4640874
Alignment:
Q  320 tttactttggaaatgagcaaaacagtttgagtaaagagcagaattca 366  Q
    |||||||||||||||||| | |||||||| |||| ||||||||||||    
T  4640828 tttactttggaaatgagcgatacagtttgggtaatgagcagaattca 4640874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 364
Target Start/End: Original strand, 33228914 - 33228960
Alignment:
Q  318 catttactttggaaatgagcaaaacagtttgagtaaagagcagaatt 364  Q
    ||||||||||||||||||||||| |  ||||||||||||||| ||||    
T  33228914 catttactttggaaatgagcaaatccatttgagtaaagagcataatt 33228960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 14087874 - 14087923
Alignment:
Q  317 acatttactttggaaatgagcaaaacagtttgagtaaagagcagaattca 366  Q
    ||||||| ||||  |||||| ||||| |||||||||||||||||||||||    
T  14087874 acatttattttgagaatgagtaaaaccgtttgagtaaagagcagaattca 14087923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 43641004 - 43641053
Alignment:
Q  318 catttactttggaaatgagcaaaacagtttgagtaaagagcagaattcat 367  Q
    |||||||||||||||||||| ||||  |||| |||| |||||||||||||    
T  43641004 catttactttggaaatgagccaaaccatttgggtaatgagcagaattcat 43641053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 26009426 - 26009369
Alignment:
Q  308 atattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    ||||||||| |||||||||||| |||||||||||  ||||| ||||||||||||||||    
T  26009426 atattttggtcatttactttgggaatgagcaaaatcgtttgggtaaagagcagaattc 26009369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 36325670 - 36325618
Alignment:
Q  314 tggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattca 366  Q
    |||||||||||||||  || ||||||||| |||||||||||||||||||||||    
T  36325670 tggacatttactttgagaacgagcaaaactgtttgagtaaagagcagaattca 36325618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 28138815 - 28138759
Alignment:
Q  309 tattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    |||||||| |||||||||||| |||||||||||   |||| ||||||||||||||||    
T  28138815 tattttggtcatttactttgggaatgagcaaaatcatttgggtaaagagcagaattc 28138759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 367
Target Start/End: Original strand, 41957586 - 41957646
Alignment:
Q  307 gatattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattcat 367  Q
    |||||||||| |||||||||||| ||||| |||||  ||||| |||||||||| |||||||    
T  41957586 gatattttggtcatttactttgggaatgatcaaaatcgtttgggtaaagagcaaaattcat 41957646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 361
Target Start/End: Complemental strand, 23344491 - 23344444
Alignment:
Q  314 tggacatttactttggaaatgagcaaaacagtttgagtaaagagcaga 361  Q
    ||||||||||||||  ||||||||||||| ||||| ||||||||||||    
T  23344491 tggacatttactttaaaaatgagcaaaaccgtttgggtaaagagcaga 23344444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 365
Target Start/End: Complemental strand, 25428786 - 25428731
Alignment:
Q  310 attttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    |||||||| ||||||||||| |||||||| ||| ||||| |||||||||| |||||    
T  25428786 attttggatatttactttgggaatgagcagaaccgtttgggtaaagagcaaaattc 25428731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 365
Target Start/End: Complemental strand, 42548216 - 42548161
Alignment:
Q  310 attttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    ||||||||| |||||||||| ||||||||||||  |||| |||| |||||||||||    
T  42548216 attttggacttttactttgggaatgagcaaaacgatttgggtaatgagcagaattc 42548161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 36326274 - 36326332
Alignment:
Q  309 tattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattcat 367  Q
    |||||||  |||||| ||||||||||| |||||| |||||| ||||||| |||||||||    
T  36326274 tattttgatcatttattttggaaatgaacaaaactgtttgaataaagagtagaattcat 36326332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 3458070 - 3458013
Alignment:
Q  309 tattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattca 366  Q
    ||||||||||||||||||||||||||||||| || ||||  |||| ||||||||||||    
T  3458070 tattttggacatttactttggaaatgagcaatacggtttcggtaatgagcagaattca 3458013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 34708774 - 34708824
Alignment:
Q  314 tggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaatt 364  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||| ||||    
T  34708774 tggacatttattttggaaatgagtaaaaccgtttgagtaaagagcataatt 34708824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 25787864 - 25787920
Alignment:
Q  310 attttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattca 366  Q
    ||||||| |||||| |||||||||||||| ||| |||||  ||||||||||||||||    
T  25787864 attttggtcatttattttggaaatgagcataaccgtttggataaagagcagaattca 25787920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 7336104 - 7336162
Alignment:
Q  307 gatattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    |||||||||| |||||||||| ||||||||||||||  |||  |||||||||| |||||    
T  7336104 gatattttggtcatttactttagaaatgagcaaaactatttaggtaaagagcataattc 7336162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 16879895 - 16879945
Alignment:
Q  309 tattttggacatttactttggaaatgagcaaaacagtttgagtaaagagca 359  Q
    ||||||||| ||||||||| | |||| ||||||||||||| ||||||||||    
T  16879895 tattttggatatttactttaggaatgtgcaaaacagtttgggtaaagagca 16879945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 339
Target Start/End: Original strand, 1975325 - 1975354
Alignment:
Q  310 attttggacatttactttggaaatgagcaa 339  Q
    ||||||||||||||||||||||||||||||    
T  1975325 attttggacatttactttggaaatgagcaa 1975354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 3758970 - 3758921
Alignment:
Q  317 acatttactttggaaatgagcaaaacagtttgagtaaagagcagaattca 366  Q
    ||||||||||||| |||||| ||||| ||||  |||||||||||||||||    
T  3758970 acatttactttgggaatgagtaaaaccgttttggtaaagagcagaattca 3758921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 16879256 - 16879204
Alignment:
Q  310 attttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaa 362  Q
    |||||||||||||||||||  |||| |||||||||||||  |||| |||||||    
T  16879256 attttggacatttactttgagaatgggcaaaacagtttggataaaaagcagaa 16879204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 806601 - 806545
Alignment:
Q  309 tattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    |||||| |||||||||||||  |||||||||||| ||||| ||||||||||||||||    
T  806601 tattttagacatttactttgagaatgagcaaaactgtttgggtaaagagcagaattc 806545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 7203481 - 7203436
Alignment:
Q  317 acatttactttggaaatgagcaaaacagtttgagtaaagagcagaa 362  Q
    ||||||||||||| || ||||||||||||||  |||||||||||||    
T  7203481 acatttactttgggaacgagcaaaacagttttggtaaagagcagaa 7203436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 14830457 - 14830404
Alignment:
Q  300 gtgtaaggatattttggacatttactttggaaatgagcaaaacagtttgagtaa 353  Q
    ||||| ||| |||||||||||||||||||| ||||||| | || ||||||||||    
T  14830457 gtgtagggacattttggacatttactttgggaatgagcgatactgtttgagtaa 14830404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 14153410 - 14153354
Alignment:
Q  309 tattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    |||||||| |||||||||||| |||||||||||   |||| |||| |||||||||||    
T  14153410 tattttggtcatttactttgggaatgagcaaaatcatttgggtaatgagcagaattc 14153354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 365
Target Start/End: Original strand, 14431488 - 14431552
Alignment:
Q  301 tgtaaggatattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    |||| |||| ||||| ||||||||||| | ||||| |||||| ||||| |||||||| |||||||    
T  14431488 tgtagggatgttttgaacatttactttaggaatgaacaaaaccgtttgtgtaaagagtagaattc 14431552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 35060918 - 35060974
Alignment:
Q  310 attttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattca 366  Q
    ||||||||||||||||||||||||||||  ||   |||| |||| ||||||||||||    
T  35060918 attttggacatttactttggaaatgagcggaatcatttgggtaatgagcagaattca 35060974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 365
Target Start/End: Complemental strand, 36217925 - 36217870
Alignment:
Q  310 attttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    ||||||||| |||||||||| |||||| |||||  |||||||||||||||||||||    
T  36217925 attttggacttttactttgggaatgagtaaaaccatttgagtaaagagcagaattc 36217870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 365
Target Start/End: Complemental strand, 37576594 - 37576543
Alignment:
Q  314 tggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    ||||||||||||||||||| ||||||||| ||||| |||| |||||||||||    
T  37576594 tggacatttactttggaaacgagcaaaaccgtttgggtaatgagcagaattc 37576543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 38676995 - 38676931
Alignment:
Q  309 tattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattcatagaattt 374  Q
    ||||||||||||||| ||||| |||||||||||| |||||  ||||||| ||||||| ||||||||    
T  38676995 tattttggacatttattttgggaatgagcaaaaccgtttggataaagaggagaattc-tagaattt 38676931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 365
Target Start/End: Original strand, 38677681 - 38677740
Alignment:
Q  306 ggatattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    |||||||||| | ||||||||||| ||||| |||||  ||||| ||||||||||||||||    
T  38677681 ggatattttgaatatttactttgggaatgaacaaaatcgtttgggtaaagagcagaattc 38677740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 42099548 - 42099576
Alignment:
Q  309 tattttggacatttactttggaaatgagc 337  Q
    |||||||||||||||||||||||||||||    
T  42099548 tattttggacatttactttggaaatgagc 42099576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 362
Target Start/End: Original strand, 38321 - 38373
Alignment:
Q  310 attttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaa 362  Q
    ||||| |||| ||||||||| ||||||| |||||||||| |||||||||||||    
T  38321 attttcgacaattactttgggaatgagcgaaacagtttgggtaaagagcagaa 38373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 5037350 - 5037298
Alignment:
Q  314 tggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattca 366  Q
    ||||||||||||||||||| || |||||| ||||  |||||||||||||||||    
T  5037350 tggacatttactttggaaacgaacaaaaccgttttggtaaagagcagaattca 5037298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 19984725 - 19984781
Alignment:
Q  309 tattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    |||||||| |||||||||| |||| ||||| ||| ||||| ||||||||||||||||    
T  19984725 tattttggtcatttactttagaaacgagcataaccgtttgggtaaagagcagaattc 19984781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 22788007 - 22788075
Alignment:
Q  309 tattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattcatagaattttat 377  Q
    |||||||| |||||||||||| ||||| |||| |  |||| |||||||||||||||| || ||||||||    
T  22788007 tattttggtcatttactttgggaatgaacaaatccatttgggtaaagagcagaattcctataattttat 22788075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 25389873 - 25389929
Alignment:
Q  310 attttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattca 366  Q
    ||||||| |||||||||||  |||||||||| |  ||||||||||||||||||||||    
T  25389873 attttggtcatttactttgagaatgagcaaatccatttgagtaaagagcagaattca 25389929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 9539108 - 9539153
Alignment:
Q  317 acatttactttggaaatgagcaaaacagtttgagtaaagagcagaa 362  Q
    ||||||||||||| ||||||||||| |||||  |||||||||||||    
T  9539108 acatttactttgggaatgagcaaaatagttttggtaaagagcagaa 9539153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 494987 - 495043
Alignment:
Q  310 attttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattca 366  Q
    ||||||| |||||||||||| |||||||||| |  ||||| ||||| ||||||||||    
T  494987 attttggtcatttactttggcaatgagcaaatctatttgaataaagcgcagaattca 495043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 366
Target Start/End: Complemental strand, 18387296 - 18387240
Alignment:
Q  310 attttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattca 366  Q
    ||||| || ||||||||||| |||||||| |||  ||||||||| ||||||||||||    
T  18387296 atttttgatatttactttgggaatgagcagaaccatttgagtaatgagcagaattca 18387240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 8447 - 8384
Alignment:
Q  302 gtaaggatattttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    |||||| ||||||  ||||||||||| |||||||||| ||  ||||| ||||||||||||||||    
T  8447 gtaagggtattttacacatttactttagaaatgagcagaaacgtttgggtaaagagcagaattc 8384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 365
Target Start/End: Complemental strand, 35831 - 35776
Alignment:
Q  310 attttggacatttactttggaaatgagcaaaacagtttgagtaaagagcagaattc 365  Q
    |||||||||||||||||||  |||||||||||  |||||  |||||||||||||||    
T  35831 attttggacatttactttgagaatgagcaaaattgtttggttaaagagcagaattc 35776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 365
Target Start/End: Complemental strand, 69778 - 69722
Alignment:
Q  310 attttggacatttactttggaaatgagcaaaac-agtttgagtaaagagcagaattc 365  Q
    ||||||||| |||||||||| ||||||| |||| | ||||||||||||||| |||||    
T  69778 attttggacttttactttggtaatgagcgaaaccaatttgagtaaagagcaaaattc 69722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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