View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17625_low_54 (Length: 219)

Name: NF17625_low_54
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17625_low_54
NF17625_low_54
[»] chr6 (12 HSPs)
chr6 (13-200)||(16987785-16987972)
chr6 (13-200)||(17069837-17070021)
chr6 (13-200)||(16658340-16658524)
chr6 (13-200)||(16838009-16838196)
chr6 (13-200)||(16797497-16797684)
chr6 (20-200)||(16867651-16867828)
chr6 (73-205)||(16781496-16781628)
chr6 (13-183)||(16844164-16844334)
chr6 (13-170)||(18805863-18806020)
chr6 (13-170)||(18872857-18873014)
chr6 (73-200)||(16788356-16788483)
chr6 (107-165)||(18870385-18870443)
[»] scaffold0133 (2 HSPs)
scaffold0133 (13-205)||(8838-9030)
scaffold0133 (13-200)||(13180-13367)
[»] chr3 (2 HSPs)
chr3 (73-200)||(7052903-7053030)
chr3 (73-200)||(38938996-38939123)
[»] scaffold0144 (1 HSPs)
scaffold0144 (13-200)||(37818-38002)
[»] scaffold0256 (1 HSPs)
scaffold0256 (73-196)||(9541-9664)
[»] chr8 (1 HSPs)
chr8 (13-205)||(13378428-13378620)
[»] scaffold0230 (1 HSPs)
scaffold0230 (13-170)||(5010-5167)
[»] scaffold0511 (1 HSPs)
scaffold0511 (13-170)||(9690-9847)
[»] chr5 (1 HSPs)
chr5 (155-195)||(30712388-30712428)


Alignment Details
Target: chr6 (Bit Score: 136; Significance: 4e-71; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 16987785 - 16987972
Alignment:
Q  13 aacacagacccatattgtcaagtcaaagtgtgtcttcaccctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaaca 112  Q
    |||||| ||||||||| |||||||||| |||||||| || |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||    
T  16987785 aacacacacccatattttcaagtcaaaatgtgtctttacactttcatcattgaagaccatttgagcaagtgctgtttttccatatccaccgtggccaaca 16987884  T
Q  113 atggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgtctcttccatata 200  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  16987885 atggaatagacagagagtttttcactgtcactagcatgtcttagaagaaactctacaatctgttctttatctttgtctcttccatata 16987972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 17069837 - 17070021
Alignment:
Q  13 aacacagacccatattgtcaagtcaaagtgtgtcttcaccctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaaca 112  Q
    |||||| ||||||||| |||||||||| ||||| || ||||||||||||||| | ||  ||||||| |||| ||||||||| | ||| ||    ||||||    
T  17069837 aacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgagtgttgtttttccttgtccgccaacaccaaca 17069936  T
Q  113 atggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgtctcttccatata 200  Q
    ||||||||||||| |||||||||||| ||||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17069937 atggaatagacagagagttcttcactgtcactagcat---ttagaagaaactctacaatctgctctttatctttgtctcttccatata 17070021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 16658340 - 16658524
Alignment:
Q  13 aacacagacccatattgtcaagtcaaagtgtgtcttcaccctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaaca 112  Q
    |||||| ||||||||| |||||||||| ||||| || ||||||||||||||||| ||  ||||||| |||| ||||||||| | ||| ||    ||||||    
T  16658340 aacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgaagaccatttgagcgagtgttgtttttccttgtccgccaacaccaaca 16658439  T
Q  113 atggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgtctcttccatata 200  Q
    |||||| |||||| |||||||||||| || |||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16658440 atggaacagacagagagttcttcactgtcgctagcat---ttagaagaaactctacaatctgctctttatctttgtctcttccatata 16658524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 16838009 - 16838196
Alignment:
Q  13 aacacagacccatattgtcaagtcaaagtgtgtcttcaccctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaaca 112  Q
    |||||| ||||||||| |||||||||| ||||| || ||||||||||||||| | ||   |||||| |||| ||||||||| | ||| ||    ||||||    
T  16838009 aacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccacttgagcgagtgttgtttttccttgtccgccaacaccaaca 16838108  T
Q  113 atggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgtctcttccatata 200  Q
    ||||||||||||| |||||||||||| | ||||||||| | || ||||||||||||||||| ||||||||||||||||||||||||||    
T  16838109 atggaatagacagagagttcttcactgttactagcatgccctataagaaactctacaatctgctctttatctttgtctcttccatata 16838196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 16797497 - 16797684
Alignment:
Q  13 aacacagacccatattgtcaagtcaaagtgtgtcttcaccctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaaca 112  Q
    |||||| ||||||||| |||||||||| ||||| || ||||||||||||||| | ||   |||||| |||| ||||||||| | ||| ||    ||||||    
T  16797497 aacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccacttgagcgagtgttgtttttccttgtccgccaacaccaaca 16797596  T
Q  113 atggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgtctcttccatata 200  Q
    ||||||||||||| ||||||||||||   ||||||||| | ||||||||||||||||||||  |||||||||||||||||||||||||    
T  16797597 atggaatagacagagagttcttcactggtactagcatgccctagaagaaactctacaatctgttctttatctttgtctcttccatata 16797684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 16867828 - 16867651
Alignment:
Q  20 acccatattgtcaagtcaaagtgtgtcttcaccctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaat 119  Q
    ||||||||| |||||||||| ||||| || ||||||||||||||||| ||   |||||| |||| ||||||||| | ||| ||    ||||||||||||     
T  16867828 acccatattttcaagtcaaaatgtgtttttaccctttcatcattgaagaccacttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaac 16867729  T
Q  120 agacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgtctcttccatata 200  Q
    |||||| |||||||||||| || |||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16867728 agacagagagttcttcactgtcgctagcat---ttagaagaaactctacaatctgctctttatctttgtctcttccatata 16867651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 16781496 - 16781628
Alignment:
Q  73 ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc 172  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||| |||||||| |  |||||||| || |||||| |||| |||||     
T  16781496 ttgagcaagtgttgtttttccatatccacctaggccaacaatggaatagacagagagatcttcactattgctagcatgcctcagaagatactcaacaatt 16781595  T
Q  173 ttctctttatctttgtctcttccatatagtttg 205  Q
    |  ||||||||| ||||||||||||||| ||||    
T  16781596 tgttctttatctctgtctcttccatatactttg 16781628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 16844164 - 16844334
Alignment:
Q  13 aacacagacccatattgtcaagtcaaagtgtgtcttcaccctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaaca 112  Q
    |||||| ||||||||| ||||   ||| || || || ||||| ||||||||||| ||   ||||||||||||||| |||||||||||||| || ||||||    
T  16844164 aacacaaacccatattttcaaaggaaaatgagtatttaccctctcatcattgaagaccagttgagcaagtgctgtctttccatatccaccatgaccaaca 16844263  T
Q  113 atggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatc 183  Q
    ||||||||||||| |||| ||||  | ||| ||||||| |||||||||||||| |||| ||| || |||||    
T  16844264 atggaatagacagagagtccttccttgtcaatagcatgccttagaagaaactcaacaaccttttccttatc 16844334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 18806020 - 18805863
Alignment:
Q  13 aacacagacccatattgtcaagtcaaagtgtgtcttcaccctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaaca 112  Q
    |||||| ||||||||| |||||| ||||||||| |  ||||||||||||||||| ||   ||||||||||| ||||||||| |  |||||    ||||||    
T  18806020 aacacacacccatattttcaagttaaagtgtgtatctaccctttcatcattgaataccacttgagcaagtgttgtttttccttgcccaccaacaccaaca 18805921  T
Q  113 atggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaa 170  Q
    ||||||||||||| |||||||||||| ||   |||||| |||||||||||||| ||||    
T  18805920 atggaatagacagagagttcttcactatcgacagcatgacttagaagaaactcaacaa 18805863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 18873014 - 18872857
Alignment:
Q  13 aacacagacccatattgtcaagtcaaagtgtgtcttcaccctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaaca 112  Q
    |||||| ||||||||| |||||| ||||||||| |  ||||||||||||||||| ||   ||||||||||| ||||||||| |  |||||    ||||||    
T  18873014 aacacacacccatattttcaagttaaagtgtgtatctaccctttcatcattgaagaccacttgagcaagtgttgtttttccttgcccaccaacaccaaca 18872915  T
Q  113 atggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaa 170  Q
    ||||||||||||| |||||||||||| ||   |||||| |||||||||||||| ||||    
T  18872914 atggaatagacagagagttcttcactatcgacagcatgacttagaagaaactcaacaa 18872857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 16788356 - 16788483
Alignment:
Q  73 ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc 172  Q
    ||||||||||| ||||||||||||| ||||  ||||||||||||||||||||| |||||||||  | ||| ||| |||  ||||| |||||| |||||||    
T  16788356 ttgagcaagtgttgtttttccatattcacctaggccaacaatggaatagacagagagttcttctttgtcagtagtatgctttagaggaaactttacaatc 16788455  T
Q  173 ttctctttatctttgtctcttccatata 200  Q
    | |||||||| | |||  ||||||||||    
T  16788456 tgctctttatatatgtaccttccatata 16788483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 18870443 - 18870385
Alignment:
Q  107 ccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactc 165  Q
    |||||||||||||||| || |||||||||||| |||  |||||| ||||| ||||||||    
T  18870443 ccaacaatggaatagaaagagagttcttcactgtcaagagcatgacttagcagaaactc 18870385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 8838 - 9030
Alignment:
Q  13 aacacagacccatattgtcaagtcaaagtgtgtcttcaccctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaaca 112  Q
    |||||| ||||||||| |||||||||| |||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  8838 aacacacacccatattttcaagtcaaaatgtgtctttaccctttcatcattgaagactgtttgagcaagtgttgtttttccatatccaccgtggccaaca 8937  T
Q  113 atggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtttg 205  Q
    || |||||||||| |||||||||||| |||| ||| || | |||||||||||||||||| | |||||||||||||||||||||||||| ||||    
T  8938 atagaatagacagagagttcttcactgtcaccagcgtgccgtagaagaaactctacaatatgctctttatctttgtctcttccatatactttg 9030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 13180 - 13367
Alignment:
Q  13 aacacagacccatattgtcaagtcaaagtgtgtcttcaccctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaaca 112  Q
    |||||| ||||||||| |||||||||| |||||||| || |||||||||||||| ||  |||||||||||| ||||||||||||||||||||||||||||    
T  13180 aacacacacccatattttcaagtcaaaatgtgtctttacactttcatcattgaagaccatttgagcaagtgttgtttttccatatccaccgtggccaaca 13279  T
Q  113 atggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgtctcttccatata 200  Q
    ||||||||||||| |||||||||||||||||| || || ||||| ||||||||||||||||  |||||||||||||||||||||||||    
T  13280 atggaatagacagagagttcttcactctcactggcgtgccttagcagaaactctacaatctgttctttatctttgtctcttccatata 13367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 7053030 - 7052903
Alignment:
Q  73 ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc 172  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| ||||| || |||||||||||| ||||||||||| || ||||||||||| ||||||    
T  7053030 ttgagcaagtgttgtttttccatatccactgtggccaacaatgggatagatagagagttcttcactgtcactagcatgcctcagaagaaactcgacaatc 7052931  T
Q  173 ttctctttatctttgtctcttccatata 200  Q
    ||||||||||||||||||||||||||||    
T  7052930 ttctctttatctttgtctcttccatata 7052903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 38939123 - 38938996
Alignment:
Q  73 ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc 172  Q
    ||||||||||| ||||||||||||||||||  | ||||||||||||||||||| ||| |||||||| |   ||||||| || |||||| |||| |||||     
T  38939123 ttgagcaagtgttgtttttccatatccacctagaccaacaatggaatagacagagagatcttcactgttgttagcatgcctcagaagatactcaacaatt 38939024  T
Q  173 ttctctttatctttgtctcttccatata 200  Q
    |  |||||||||||||||||||||||||    
T  38939023 tgttctttatctttgtctcttccatata 38938996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 37818 - 38002
Alignment:
Q  13 aacacagacccatattgtcaagtcaaagtgtgtcttcaccctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaaca 112  Q
    |||||| ||||||||| |||||||||| ||||| || ||||||||||||||| | ||  ||||||| |||| ||||||||| | ||| ||    ||||||    
T  37818 aacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgagtgttgtttttccttgtccgccaacaccaaca 37917  T
Q  113 atggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgtctcttccatata 200  Q
    |||||| |||||  |||||||||||| || || ||||   |||||||||||||||||||||  |||||||||||||||||||||||||    
T  37918 atggaacagacaaagagttcttcactttcgctggcat---ttagaagaaactctacaatctgttctttatctttgtctcttccatata 38002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 196
Target Start/End: Original strand, 9541 - 9664
Alignment:
Q  73 ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc 172  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||| |||||||| |  |||||||| || |||||| |||| |||||     
T  9541 ttgagcaagtgttgtttttccatatccacctaggccaacaatggaatagacagagagatcttcactgttgctagcatgcctcagaagatactcaacaatt 9640  T
Q  173 ttctctttatctttgtctcttcca 196  Q
    || |||||||||||||||||||||    
T  9641 ttttctttatctttgtctcttcca 9664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 13378428 - 13378620
Alignment:
Q  13 aacacagacccatattgtcaagtcaaagtgtgtcttcaccctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaaca 112  Q
    |||||| ||||||||| ||||||||||||| ||  | ||  ||||||| ||| | ||   ||||||||||| ||||||||||||||||||  ||||||||    
T  13378428 aacacaaacccatattttcaagtcaaagtgggtgcttacgttttcatcgttgtacaccaattgagcaagtgttgtttttccatatccacctaggccaaca 13378527  T
Q  113 atggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtttg 205  Q
    ||||||||||||| ||  ||||| || | ||| ||||  ||||||||| |||| ||||| |  ||||||||||||||||||||||||| ||||    
T  13378528 atggaatagacagagatatcttctctgttacttgcatcccttagaagatactcaacaatttgttctttatctttgtctcttccatatactttg 13378620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 5010 - 5167
Alignment:
Q  13 aacacagacccatattgtcaagtcaaagtgtgtcttcaccctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaaca 112  Q
    |||||| ||||||||| |||||| ||||||||| |  |||||||| |||||||| ||   ||||||||||| ||||||||| |  |||||    ||||||    
T  5010 aacacacacccatattttcaagttaaagtgtgtatctaccctttcctcattgaacaccacttgagcaagtgttgtttttccttgcccaccaacaccaaca 5109  T
Q  113 atggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaa 170  Q
    ||||||||||||| |||||||||||| ||   |||||| |||||||||||||| ||||    
T  5110 atggaatagacagagagttcttcactatcgacagcatgacttagaagaaactcaacaa 5167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 9690 - 9847
Alignment:
Q  13 aacacagacccatattgtcaagtcaaagtgtgtcttcaccctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaaca 112  Q
    |||||| ||||||||| |||||| ||||||||| |  ||||||||||||||||| ||   ||||||||||| ||||||||| |  |||||    ||||||    
T  9690 aacacacacccatattttcaagttaaagtgtgtatctaccctttcatcattgaacaccacttgagcaagtgttgtttttccttgcccaccaacaccaaca 9789  T
Q  113 atggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaa 170  Q
    ||||||||||| | |||||||||||| ||   | |||| |||||||||||||| ||||    
T  9790 atggaatagacngagagttcttcactatccacaacatgacttagaagaaactcaacaa 9847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 30712428 - 30712388
Alignment:
Q  155 agaagaaactctacaatcttctctttatctttgtctcttcc 195  Q
    ||||||||||| |||||||| |||||||| |||||||||||    
T  30712428 agaagaaactcgacaatcttttctttatcattgtctcttcc 30712388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University