View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17625_low_55 (Length: 219)

Name: NF17625_low_55
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17625_low_55
NF17625_low_55
[»] chr6 (8 HSPs)
chr6 (47-158)||(31442516-31442627)
chr6 (102-157)||(26840415-26840470)
chr6 (88-158)||(31665629-31665700)
chr6 (49-157)||(7867910-7868018)
chr6 (88-155)||(15296147-15296215)
chr6 (102-161)||(26839985-26840044)
chr6 (51-157)||(826696-826802)
chr6 (73-157)||(20915983-20916067)
[»] chr7 (5 HSPs)
chr7 (47-157)||(20077302-20077412)
chr7 (101-157)||(48850726-48850782)
chr7 (47-157)||(4407779-4407887)
chr7 (102-157)||(11072196-11072251)
chr7 (101-157)||(39742308-39742364)
[»] chr8 (7 HSPs)
chr8 (47-159)||(26981033-26981145)
chr8 (47-157)||(26083903-26084013)
chr8 (88-158)||(42315341-42315412)
chr8 (43-157)||(23828343-23828458)
chr8 (111-158)||(7496757-7496804)
chr8 (47-119)||(5334311-5334383)
chr8 (101-157)||(42932716-42932772)
[»] chr2 (6 HSPs)
chr2 (101-154)||(21922337-21922390)
chr2 (87-157)||(38996520-38996590)
chr2 (101-158)||(6667462-6667519)
chr2 (102-158)||(32281485-32281541)
chr2 (75-157)||(28125536-28125618)
chr2 (101-158)||(28926074-28926132)
[»] chr5 (4 HSPs)
chr5 (88-157)||(37337323-37337393)
chr5 (88-158)||(26110687-26110758)
chr5 (101-156)||(22780073-22780128)
chr5 (47-119)||(9045161-9045233)
[»] chr4 (8 HSPs)
chr4 (88-157)||(12094856-12094925)
chr4 (101-157)||(9199512-9199568)
chr4 (101-157)||(24257703-24257759)
chr4 (87-154)||(9451245-9451312)
chr4 (47-146)||(10427608-10427706)
chr4 (84-158)||(6898749-6898823)
chr4 (47-157)||(9199750-9199860)
chr4 (101-157)||(27067874-27067930)
[»] chr3 (7 HSPs)
chr3 (101-158)||(15291460-15291517)
chr3 (87-158)||(39484808-39484880)
chr3 (101-157)||(1529165-1529222)
chr3 (101-158)||(52041398-52041455)
chr3 (110-157)||(49235500-49235547)
chr3 (101-158)||(15996393-15996450)
chr3 (127-159)||(1141742-1141774)
[»] chr1 (3 HSPs)
chr1 (102-157)||(15700721-15700776)
chr1 (108-158)||(44508600-44508650)
chr1 (108-145)||(24819195-24819232)


Alignment Details
Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 31442627 - 31442516
Alignment:
Q  47 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 146  Q
    ||||||||| ||||| | |||| || |||||| |||||  |||||| |||| | ||||||||||||||||||| || || ||||||||||||||||||||    
T  31442627 tgattaggaaaagcacttaggagaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgtgattgcttgaccaaacaagcttta 31442528  T
Q  147 gaaagaaagata 158  Q
    | ||||||||||    
T  31442527 gtaagaaagata 31442516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 26840470 - 26840415
Alignment:
Q  102 taggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 157  Q
    |||||||| |||||||| | | || |||||||||||||||||||||||||||||||    
T  26840470 taggttaagattagggttaatgatggcttgaccaaacaagctttagaaagaaagat 26840415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 31665629 - 31665700
Alignment:
Q  88 tggagagaaatttttaggttaa-aattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 158  Q
    ||||| |||| | ||||||||| ||||||||| | | |||||||||||||||||||||||| ||||||||||    
T  31665629 tggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 31665700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 7867910 - 7868018
Alignment:
Q  49 attaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttaga 148  Q
    |||| |||||||| | || |||| | |||| ||| ||||||||| |||| | ||||| | ||||||||||| |  |||||||||||| | |||||||||     
T  7867910 attaagataagcacttagaaaaattaaatgcttgtacaatggagggaaaatattagggttaaattagggtatgagatagcttgaccagataagctttagt 7868009  T
Q  149 aagaaagat 157  Q
    |||||||||    
T  7868010 aagaaagat 7868018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 15296215 - 15296147
Alignment:
Q  88 tggagagaaatttttaggttaaaa-ttagggtaagttatagcttgaccaaacaagctttagaaagaaag 155  Q
    ||||| |||| | ||||||||||| ||||||| | |||||||||||| ||||||||||||| |||||||    
T  15296215 tggagggaaaatattaggttaaaaattagggttacttatagcttgacaaaacaagctttagtaagaaag 15296147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 26840044 - 26839985
Alignment:
Q  102 taggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagatacat 161  Q
    |||||||| |||||||| | | || |||||| ||||||| ||||||||||||||||||||    
T  26840044 taggttaagattagggttaatgatggcttgatcaaacaaactttagaaagaaagatacat 26839985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 826696 - 826802
Alignment:
Q  51 taggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaa 150  Q
    ||||| ||||| ||| ||||| | |||| |||| | |||||| |||| | |||||||||||||| ||| |   |||||||||||| ||||| ||||| ||    
T  826696 taggaaaagcactaacgaaaattaaatgattgggcgatggagggaaaatattaggttaaaattaaggtgaacaatagcttgaccagacaagttttagtaa 826795  T
Q  151 gaaagat 157  Q
    |||||||    
T  826796 gaaagat 826802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 20915983 - 20916067
Alignment:
Q  73 ttaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 157  Q
    |||||| |||||  |||||| |||| | |||||||||||||| ||||   ||| |||||| || ||||||||||| |||||||||    
T  20915983 ttaatgcttggatgatggagggaaaatattaggttaaaattaaggtatcatattgcttgatcagacaagctttagtaagaaagat 20916067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 20077302 - 20077412
Alignment:
Q  47 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 146  Q
    ||||||||| ||||| |||||  || |||||| |||||  |||||| |||| | ||||||||||||||||||| | ||| ||||||||||||||||||||    
T  20077302 tgattaggaaaagcactaaggtgaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccaaacaagcttta 20077401  T
Q  147 gaaagaaagat 157  Q
    | |||||||||    
T  20077402 gtaagaaagat 20077412  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 48850782 - 48850726
Alignment:
Q  101 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 157  Q
    ||||||||| ||||||||||   ||||||||| || |||||||||||||||||||||    
T  48850782 ttaggttaagattagggtaaacaatagcttgatcagacaagctttagaaagaaagat 48850726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 4407887 - 4407779
Alignment:
Q  47 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 146  Q
    ||||||||| || || |||||| || |||||| ||||   |||||| |||| | ||||||||||||||||||| | ||| ||||||||| ||  ||||||    
T  4407887 tgattaggaaaaacactaaggagaatttaatgtttgggtgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccagac--gcttta 4407790  T
Q  147 gaaagaaagat 157  Q
    | |||||||||    
T  4407789 gtaagaaagat 4407779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 11072196 - 11072251
Alignment:
Q  102 taggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 157  Q
    ||||||||||||||||| ||  || ||||||||  |||||||||||||||||||||    
T  11072196 taggttaaaattagggttagggattgcttgaccggacaagctttagaaagaaagat 11072251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 39742308 - 39742364
Alignment:
Q  101 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 157  Q
    ||||||||| |||||||| |   ||||||||| |||||||||||||| |||||||||    
T  39742308 ttaggttaagattagggttatcaatagcttgatcaaacaagctttagtaagaaagat 39742364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 26981145 - 26981033
Alignment:
Q  47 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 146  Q
    ||||||||| || || |||||| || |||||| |||||  ||||||  ||| | ||||||||||||||||||| | ||| |||||| |||||||||||||    
T  26981145 tgattaggaaaaacactaaggagaatttaatgcttggatgatggaggaaaaatattaggttaaaattagggtatgatattgcttgatcaaacaagcttta 26981046  T
Q  147 gaaagaaagatac 159  Q
    | |||||||||||    
T  26981045 gtaagaaagatac 26981033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 26084013 - 26083903
Alignment:
Q  47 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 146  Q
    ||||||||| ||||| |||| | || |||||| || ||  |||||| |||| | ||||||||||||||||||| | ||| ||||||||| ||||||||||    
T  26084013 tgattaggaaaagcactaagaagaatttaatgctttgatgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccagacaagcttta 26083914  T
Q  147 gaaagaaagat 157  Q
    | |||||||||    
T  26083913 gtaagaaagat 26083903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 42315412 - 42315341
Alignment:
Q  88 tggagagaaatttttaggttaa-aattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 158  Q
    ||||| |||| | ||||||||| ||||||||| | | |||||||||||||||||||||||| ||||||||||    
T  42315412 tggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 42315341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 157
Target Start/End: Complemental strand, 23828458 - 23828343
Alignment:
Q  43 atgctgattaggataagcaataaggaaaaattaatggttgga-caatggagagaaatttttaggttaaaa-ttagggtaagttatagcttgaccaaacaa 140  Q
    |||||||||||||||| || ||||||  |||||| || || | || ||||| |||| | ||||||||||| ||||||| | | |||||||||||||||||    
T  23828458 atgctgattaggataaacactaaggagtaattaa-ggctgaagcattggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaacaa 23828360  T
Q  141 gctttagaaagaaagat 157  Q
    ||| ||| |||||||||    
T  23828359 gctctagtaagaaagat 23828343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 7496804 - 7496757
Alignment:
Q  111 attagggtaagttatagcttgaccaaacaagctttagaaagaaagata 158  Q
    |||||||| || |||||||||| |||||||||||||| ||||||||||    
T  7496804 attagggtcagctatagcttgatcaaacaagctttagtaagaaagata 7496757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 5334383 - 5334311
Alignment:
Q  47 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggta 119  Q
    ||||||||| ||||| ||| || || |||||| |||||  |||||| |||| | |||||||||||||||||||    
T  5334383 tgattaggaaaagcattaaagagaatttaatgcttggatgatggagggaaaatcttaggttaaaattagggta 5334311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 42932772 - 42932716
Alignment:
Q  101 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 157  Q
    |||||||||||||||| || | ||| |||||| || ||||||||||| |||||||||    
T  42932772 ttaggttaaaattaggatatgatattgcttgatcagacaagctttagtaagaaagat 42932716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 21922390 - 21922337
Alignment:
Q  101 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaa 154  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||||||||||    
T  21922390 ttaggttaagattagggtaagttatagcttgatcagacaagctttagaaagaaa 21922337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 38996520 - 38996590
Alignment:
Q  87 atggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 157  Q
    |||||| |||| | ||||||||||||||||||||  |||||||||| || ||||||||||| |||||||||    
T  38996520 atggagggaaaatattaggttaaaattagggtaacatatagcttgatcagacaagctttagtaagaaagat 38996590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 6667519 - 6667462
Alignment:
Q  101 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 158  Q
    ||||||||  ||||||||||   |||||||||||||||||||||||||||||||||||    
T  6667519 ttaggttaggattagggtaaacaatagcttgaccaaacaagctttagaaagaaagata 6667462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 32281541 - 32281485
Alignment:
Q  102 taggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 158  Q
    ||||||||||||||||| | | ||||||||||||||||| |||||| ||||||||||    
T  32281541 taggttaaaattagggttactaatagcttgaccaaacaaactttagtaagaaagata 32281485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 28125618 - 28125536
Alignment:
Q  75 aatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 157  Q
    |||| ||| ||||||||| |||| | ||||| | ||||||||||| |  |||||||||||| ||||||||||| |||||||||    
T  28125618 aatgcttgtacaatggagggaaaatattagggttaaattagggtatgagatagcttgaccagacaagctttagtaagaaagat 28125536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 28926132 - 28926074
Alignment:
Q  101 ttaggttaa-aattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 158  Q
    ||||||||| ||||||||| | | |||||||||||| ||||||||||| ||||||||||    
T  28926132 ttaggttaagaattagggttactaatagcttgaccagacaagctttagtaagaaagata 28926074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 37337393 - 37337323
Alignment:
Q  88 tggagagaaatttttaggttaaaa-ttagggtaagttatagcttgaccaaacaagctttagaaagaaagat 157  Q
    ||||| |||| | ||||||||||| ||||||| | |||||||||||||||||||||||||| |||||||||    
T  37337393 tggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagctttagtaagaaagat 37337323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 26110758 - 26110687
Alignment:
Q  88 tggagagaaatttttaggttaaaa-ttagggtaagttatagcttgaccaaacaagctttagaaagaaagata 158  Q
    ||||| |||| | ||||||||||| ||||||| | |||||||||||||||||||| ||||| ||||||||||    
T  26110758 tggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagttttagtaagaaagata 26110687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 22780073 - 22780128
Alignment:
Q  101 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaaga 156  Q
    ||||||||| ||||||||||   ||||||||| || ||||||||||||||||||||    
T  22780073 ttaggttaagattagggtaaacaatagcttgatcagacaagctttagaaagaaaga 22780128  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 9045233 - 9045161
Alignment:
Q  47 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggta 119  Q
    ||||||||| ||||| |||||| || |||||| || ||  |||||| |||| | |||||||||||||||||||    
T  9045233 tgattaggaaaagcactaaggagaatttaatgttttgatgatggagggaaaatattaggttaaaattagggta 9045161  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 12094856 - 12094925
Alignment:
Q  88 tggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 157  Q
    ||||| |||| | ||||||||||||||||||   | |||||||||||||||||||||||| |||||||||    
T  12094856 tggagggaaaatattaggttaaaattagggtttctaatagcttgaccaaacaagctttagtaagaaagat 12094925  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 9199568 - 9199512
Alignment:
Q  101 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 157  Q
    ||||||||||||||||||| | ||| ||||||||| ||||||||||| |||||||||    
T  9199568 ttaggttaaaattagggtatgatattgcttgaccagacaagctttagtaagaaagat 9199512  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 24257759 - 24257703
Alignment:
Q  101 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 157  Q
    |||||||||||||||||| |   || ||||||||||||||||||||| |||||||||    
T  24257759 ttaggttaaaattagggtgaacaattgcttgaccaaacaagctttagtaagaaagat 24257703  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 9451312 - 9451245
Alignment:
Q  87 atggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaa 154  Q
    |||||| |||| | |||||||||||||||||| |   |||||||||||| ||||||||||| ||||||    
T  9451312 atggagggaaaatattaggttaaaattagggtgaacaatagcttgaccagacaagctttagtaagaaa 9451245  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 146
Target Start/End: Original strand, 10427608 - 10427706
Alignment:
Q  47 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 146  Q
    ||||||||| || || |||| | || |||||| |||||  |||||| ||||| || ||||||||||||||||| | ||| |||||||||||||| |||||    
T  10427608 tgattaggaaaaacactaagaagaatttaatgcttggatgatggagggaaatatt-aggttaaaattagggtatgatattgcttgaccaaacaaccttta 10427706  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 6898749 - 6898823
Alignment:
Q  84 acaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 158  Q
    ||||||||  |||| | ||||||||| |||||||| |   ||||||||| |||||||||||||| ||||||||||    
T  6898749 acaatggacggaaaatattaggttaagattagggttaccaatagcttgatcaaacaagctttagtaagaaagata 6898823  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 9199860 - 9199750
Alignment:
Q  47 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 146  Q
    ||||||||| ||| | |||||| || |||||| |||||  |||||| |||| | ||||||||| | | || || | ||| ||||||||| ||||||||||    
T  9199860 tgattaggaaaagaactaaggagaatttaatgcttggatgatggagggaaaatattaggttaatagtgggatatgatattgcttgaccagacaagcttta 9199761  T
Q  147 gaaagaaagat 157  Q
    | |||||||||    
T  9199760 gtaagaaagat 9199750  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 27067930 - 27067874
Alignment:
Q  101 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 157  Q
    |||| ||||||||||||||    |||| ||||||||||||||||||| |||||||||    
T  27067930 ttagattaaaattagggtataggatagtttgaccaaacaagctttagtaagaaagat 27067874  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 15291517 - 15291460
Alignment:
Q  101 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 158  Q
    ||||||||| ||||||||||   |||||||||||||||||||||||| ||||||||||    
T  15291517 ttaggttaagattagggtaaacaatagcttgaccaaacaagctttagtaagaaagata 15291460  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 158
Target Start/End: Original strand, 39484808 - 39484880
Alignment:
Q  87 atggagagaaatttttaggttaaaattagggt-aagttatagcttgaccaaacaagctttagaaagaaagata 158  Q
    |||||| |||| | ||||||||||| |||||| ||  ||||||||||||||||||||||||| ||||||||||    
T  39484808 atggagggaaaatattaggttaaaactagggtgaacatatagcttgaccaaacaagctttagtaagaaagata 39484880  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 1529222 - 1529165
Alignment:
Q  101 ttaggttaa-aattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 157  Q
    ||||||||| ||||||||| | | |||||||||||||||||||||||| |||||||||    
T  1529222 ttaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagat 1529165  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 52041398 - 52041455
Alignment:
Q  101 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 158  Q
    |||||||||||||||||| |   |||||||||||| ||||||||||| ||||||||||    
T  52041398 ttaggttaaaattagggtgaacaatagcttgaccagacaagctttagtaagaaagata 52041455  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 49235500 - 49235547
Alignment:
Q  110 aattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 157  Q
    ||||||||||| | ||||||||||||||||| |||||| |||||||||    
T  49235500 aattagggtaaatgatagcttgaccaaacaaactttagtaagaaagat 49235547  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 15996393 - 15996450
Alignment:
Q  101 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 158  Q
    |||||||| |||||||||||   ||||||||| || ||||||||||| ||||||||||    
T  15996393 ttaggttagaattagggtaaacaatagcttgatcagacaagctttagtaagaaagata 15996450  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 1141774 - 1141742
Alignment:
Q  127 gcttgaccaaacaagctttagaaagaaagatac 159  Q
    ||||||||||||||||||||| |||||||||||    
T  1141774 gcttgaccaaacaagctttagtaagaaagatac 1141742  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 15700776 - 15700721
Alignment:
Q  102 taggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 157  Q
    ||||||||||||||||| | | ||||||||||||||||| |||||| |||||||||    
T  15700776 taggttaaaattagggttactaatagcttgaccaaacaaactttagtaagaaagat 15700721  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 44508650 - 44508600
Alignment:
Q  108 aaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 158  Q
    ||||||||||| ||| ||||||||| || ||||||||||||||||||||||    
T  44508650 aaaattagggttagtaatagcttgatcagacaagctttagaaagaaagata 44508600  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 24819232 - 24819195
Alignment:
Q  108 aaaattagggtaagttatagcttgaccaaacaagcttt 145  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  24819232 aaaattagggttagtaatagcttgaccaaacaagcttt 24819195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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