View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17625_low_6 (Length: 506)
Name: NF17625_low_6
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 196 - 484
Target Start/End: Original strand, 11627487 - 11627775
Alignment:
| Q |
196 |
gtcactgagggtatttagactaatctagagatcatggcagaggctgtgaattttcttctgcaaaggcttgtacctgtattcgagaatgaggtgaatttgc |
295 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11627487 |
gtcactgagggtattttgactgatctagagatcatggcagaggctgtgaattttcttctgcaaaggcttgtacctgtattcgagaatgaggtgaatttgc |
11627586 |
T |
|
| Q |
296 |
tcacaggggttgaagcagaagtggtgtatctgaaagaaaaattggagctcataaaagccttcttaaaggttgccgatgcgttagaagagagtgatgagga |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
11627587 |
tcacaggggttgaagcagaagtggtgtatctgaaagaaaaattggagctcataaaagctttcttaaaggttgctgatgcgttagaagaaagtgacgagga |
11627686 |
T |
|
| Q |
396 |
actcaaagtttgggttaagcaagtcagagatgttgctcatgagactgaagatattcttgatgaattggaacttcttgtccaggcgcgta |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11627687 |
actcaaagtttgggttaagcaagtcagagatgttgctcatgagactgaagatattcttgatgaattggaacttcttgtccaggcgcgta |
11627775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 217 - 484
Target Start/End: Original strand, 11649425 - 11649695
Alignment:
| Q |
217 |
aatctagagatcatggcagag---gctgtgaattttcttctgcaaaggcttgtacctgtattcgagaatgaggtgaatttgctcacaggggttgaagcag |
313 |
Q |
| |
|
|||| |||||||||||||||| || || | ||||||||||||||||||||| |||||||| |||||| || ||||||||||| | || ||||||| | |
|
|
| T |
11649425 |
aatcaagagatcatggcagagagtgcagttagttttcttctgcaaaggcttgtgcctgtatttgagaataagatgaatttgctcgctggcgttgaagacg |
11649524 |
T |
|
| Q |
314 |
aagtggtgtatctgaaagaaaaattggagctcataaaagccttcttaaaggttgccgatgcgttagaagagagtgatgaggaactcaaagtttgggttaa |
413 |
Q |
| |
|
|||||||||||||||||| | | ||||| |||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11649525 |
aagtggtgtatctgaaaggacagttggaactcataggagccttcttaaaggttgcagatgcattagaagagagtgatgaggaactcaaagtttgggttaa |
11649624 |
T |
|
| Q |
414 |
gcaagtcagagatgttgctcatgagactgaagatattcttgatgaattggaacttcttgtccaggcgcgta |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11649625 |
gcaagtcagagatgttgctcatgagactgaagatattcttgatgaattggaacttcttgtccaggcgcgta |
11649695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 11627304 - 11627340
Alignment:
| Q |
145 |
aaaatctggttagcatatcaaactttgtcgctattag |
181 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
11627304 |
aaaatctggttagcatatcaaagtttgtctctattag |
11627340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University