View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_low_60 (Length: 207)
Name: NF17625_low_60
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_60 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 6473739 - 6473936
Alignment:
| Q |
1 |
tcctaccattgattcctatttctcaagttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaaggtgt |
100 |
Q |
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| T |
6473739 |
tcctaccattgattcctatttctgaagttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaatagggaaggtgt |
6473838 |
T |
|
| Q |
101 |
tgaagaaggatggaaaggttttgtctatgcattgcaaggaatttatgataatgaaagtggattgaagaatataaaaagtttgaatagatttgatgatg |
198 |
Q |
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| T |
6473839 |
tgaagaaggatggaaaggttttgtctatgcattgcaaggaatttatgataatgaaagtggattgaagaatataaaaagtttgaatagatttgatgatg |
6473936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 6464812 - 6464618
Alignment:
| Q |
4 |
taccattgattcctatttctcaagttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaaggtgttga |
103 |
Q |
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| T |
6464812 |
taccattgcttccaatttctgaattcttattttcaaatgttgattttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttgg |
6464713 |
T |
|
| Q |
104 |
agaaggatggaaaggttttgtctatgcattgcaaggaatttatgataatgaaagtggattgaagaatataaaaagtttgaatagatttgatgatg |
198 |
Q |
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| T |
6464712 |
agaaggatggaaagggtttgtctatgccttggaaggagtttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
6464618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 6462520 - 6462714
Alignment:
| Q |
4 |
taccattgattcctatttctcaagttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaaggtgttga |
103 |
Q |
| |
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|||||||| ||||||||||| |||| ||||| || |||||||| ||||||||| ||||||| || |||||||||| |||||| ||||| || |||||||| |
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| T |
6462520 |
taccattggttcctatttctgaagtattgttctctgatgttgaatatgtgaagcaacttgttgaatggacattgcctgctttgaaaagagatggtgttga |
6462619 |
T |
|
| Q |
104 |
agaaggatggaaaggttttgtctatgcattgcaaggaatttatgataatgaaagtggattgaagaatataaaaagtttgaatagatttgatgatg |
198 |
Q |
| |
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||||||||||||||| ||||| ||||| || ||||||||||||||||| |||| || |||||||||||||| || ||| || |||||||||||| |
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| T |
6462620 |
agaaggatggaaagggtttgtatatgctttacaaggaatttatgataaggaaactgcattgaagaatataagaaatttaaaaggatttgatgatg |
6462714 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 6496152 - 6495958
Alignment:
| Q |
4 |
taccattgattcctatttctcaagttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaaggtgttga |
103 |
Q |
| |
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|||||||| ||||||||||| |||| ||||| || ||||| || ||||||||| ||||||| || ||| |||||| |||||| ||||| || |||||||| |
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| T |
6496152 |
taccattgcttcctatttctgaagtattgttctctgatgtcgaatatgtgaagcaacttgttgaatgggcattgcctgctttgaaaagagatggtgttga |
6496053 |
T |
|
| Q |
104 |
agaaggatggaaaggttttgtctatgcattgcaaggaatttatgataatgaaagtggattgaagaatataaaaagtttgaatagatttgatgatg |
198 |
Q |
| |
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||||||||||||||| ||||| ||||| || ||||||||||||||||| |||| || |||||||||||||| || ||| || |||||||||||| |
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| T |
6496052 |
agaaggatggaaagggtttgtatatgccttacaaggaatttatgataaggaaaatgcattgaagaatataagaaatttaaaaggatttgatgatg |
6495958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 4 - 195
Target Start/End: Complemental strand, 6504959 - 6504765
Alignment:
| Q |
4 |
taccattgattcctatttctcaagttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaa---ggtgt |
100 |
Q |
| |
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|||||||| |||||||||| ||| ||||||||| |||||||||||||| || || ||||| ||||||||||||| |||||| || |||||| ||||| |
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| T |
6504959 |
taccattggctcctatttctgaagatttgttttctgatgttgattatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgt |
6504860 |
T |
|
| Q |
101 |
tgaagaaggatggaaaggttttgtctatgcattgcaaggaatttatgataatgaaagtggattgaagaatataaaaagtttgaatagatttgatg |
195 |
Q |
| |
|
|| |||||||||||| || || | ||| ||||| |||||||||||||||||||||||| ||||||||| |||| ||| |||||| | ||||||| |
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|
| T |
6504859 |
tggagaaggatggaagggattcttatattcattggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatg |
6504765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 6525850 - 6525695
Alignment:
| Q |
4 |
taccattgattcctatttctcaagttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaaggtgttga |
103 |
Q |
| |
|
|||||||| |||| |||||| |||| ||||| || |||||| |||||||||| |||||||||||||||||| | ||||||||||||||| |||||||| |
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| T |
6525850 |
taccattgcttccaatttctgaagtcttgttctctgatgttatgtatgtgaagggacttgtggagtggacattacctgctttaaaaagggatggtgttga |
6525751 |
T |
|
| Q |
104 |
agaaggatggaaaggttttgtctatgcattgcaaggaatttatgataatgaaagtg |
159 |
Q |
| |
|
||| || ||||| || ||||| ||||| |||||||| ||||||||||||||||||| |
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|
| T |
6525750 |
agagggttggaaggggtttgtttatgccttgcaagggatttatgataatgaaagtg |
6525695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 6516812 - 6517003
Alignment:
| Q |
4 |
taccattgattcctatttctcaagttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaaggtgttga |
103 |
Q |
| |
|
|||||||| ||| |||||| ||||||| ||||| ||||||||||||||||| |||||||| |||||| |||||| | |||| |||| | ||||| ||| |
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|
| T |
6516812 |
taccattgtgtccaatttctgaagttttattttctgatgttgattatgtgaaagaacttgttgagtgggcattgcctcctttcaaaacgttaggtgctga |
6516911 |
T |
|
| Q |
104 |
agaaggatggaaaggttttgtctatgcattgcaaggaatttatgataatgaaagtggattgaagaatataaaaagtttgaatagatttgatg |
195 |
Q |
| |
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| | |||||| || ||| ||||||||| |||||||||||||||||||||||| ||||||||| |||| ||| |||||| | ||||||| |
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| T |
6516912 |
aaacagatggacgggatttcggtatgcattggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatg |
6517003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 1842464 - 1842552
Alignment:
| Q |
15 |
cctatttctcaagttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattg-cttgctttaaaaagggaaggtgttg |
102 |
Q |
| |
|
||||||||| || |||||| || |||||| | |||||||||| ||||||||||||||||||| ||| ||||| ||||||| ||||||| |
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|
| T |
1842464 |
cctatttctgaaattttgtcctctgatgttaagtatgtgaagggacttgtggagtggacattgcctttctttagaaagggatggtgttg |
1842552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 6527661 - 6527578
Alignment:
| Q |
15 |
cctatttctcaagttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaaggt |
98 |
Q |
| |
|
||||||||| ||||||||||||| |||| | |||||||||||||| || || |||||||| | ||| ||||||||||||||| |
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|
| T |
6527661 |
cctatttctgaagttttgttttctgatgcaaagtatgtgaaggaactagttgaatggacattacctgccttaaaaagggaaggt |
6527578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 6456826 - 6456705
Alignment:
| Q |
30 |
ttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaaggtgttgaagaaggatggaaaggttttgtctatg |
129 |
Q |
| |
|
|||||||| ||||||| |||||| ||||| |||||||| |||||||| | | ||| || ||| ||||||||| ||||| |||||||||||| | |||| |
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|
| T |
6456826 |
ttgttttcggatgttggttatgtaaaggagcttgtggaatggacattacctaatttgaataggaaaggtgttggtgaagggtggaaaggttttatatatg |
6456727 |
T |
|
| Q |
130 |
cattgcaaggaatttatgataa |
151 |
Q |
| |
|
| || |||| | ||||||||| |
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|
| T |
6456726 |
ctatggaaggtacttatgataa |
6456705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 1846173 - 1846220
Alignment:
| Q |
48 |
tatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaa |
95 |
Q |
| |
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|||||||||| ||||||||||| |||||| |||||||| ||||||||| |
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|
| T |
1846173 |
tatgtgaagggacttgtggagtcgacattacttgctttgaaaagggaa |
1846220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 6521272 - 6521419
Alignment:
| Q |
4 |
taccattgattcctatttctcaagttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaaggtgttga |
103 |
Q |
| |
|
|||||||| |||||||||| || | |||||||| |||||||| | ||||||||| ||||||| ||| |||| || ||| |||| || ||||||| |
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|
| T |
6521272 |
taccattgcttcctatttcagaaatgttgttttctgatgttgaatttgtgaaggatgttgtggaatgggtgttgcctgatttggaaagtgatggtgttgg |
6521371 |
T |
|
| Q |
104 |
agaaggatggaaaggttttgtctatgcattgcaaggaatttatgataa |
151 |
Q |
| |
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||||||||||| || ||||| ||||| || | |||||||||||||| |
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| T |
6521372 |
tgaaggatggaagggatttgtgtatgctttaaagggaatttatgataa |
6521419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 3754632 - 3754692
Alignment:
| Q |
109 |
gatggaaaggttttgtctatgcattgcaaggaatttatgataatgaaagtggattgaagaa |
169 |
Q |
| |
|
|||||||||| ||| ||||| | |||||||||||||||||||| |||| || ||||||||| |
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|
| T |
3754632 |
gatggaaagggtttatctattctttgcaaggaatttatgataaagaaaatgcattgaagaa |
3754692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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