View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17625_low_8 (Length: 495)
Name: NF17625_low_8
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Original strand, 36282886 - 36283350
Alignment:
| Q |
18 |
cccaccgtatttcactgtcactgtaaaatcctaccaccgttcatatttcctctcctttaggtacgttttcctcttccatttcacctctaattttatttac |
117 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36282886 |
cccaccgtatttcaccgtcactgtaaaatcctaccaccgttcatatttcctctcctttaggtacgttttcctcttccatttcacctctaattttatttac |
36282985 |
T |
|
| Q |
118 |
atttcccatatcccacattaaaacccttgcatggccaaaataaaactagaactagaagaacaagttgataggatcagtagtttacacaatgaagtacttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36282986 |
atttcccatatcccacattaaaacccttgcatggccaaaagaaaactagaactagaagaacaagttgataggatcagtagtttacacaatgaagtacttg |
36283085 |
T |
|
| Q |
218 |
ctaatatcctttcattcctaccaacaaaagaagctattgctactagtgttttgtcacgtaggtgggtttctctttggacacttactaattctcttcattt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36283086 |
ctaatatcctttcattcctaccaacaaaagaagctattgctactagtgttttgtcacgtaggtgggtttctctttggacacttactaattctcttcattt |
36283185 |
T |
|
| Q |
318 |
cccagaaaattgtccaacaagaaataactttgttcaaattgtgaaaagtgtcttagctcaaagaaaaccaagttgtatgaaaagagtttcattctctatc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36283186 |
cccagaaaattgtccaacaagaaataactttgttcaaattgtgaaaagtgtcttagctcaaagaaaaccaagttgtatgaaaagagtttcattctctatc |
36283285 |
T |
|
| Q |
418 |
cacaataactgttatatcccacacttggttagttcaatagtttgcatggcaagtaaacaaaaagt |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36283286 |
cacaataactgttatatcccacacttggttagttcaatagtttgcatggcaagtaaacaaaaagt |
36283350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 178 - 482
Target Start/End: Original strand, 34553770 - 34554083
Alignment:
| Q |
178 |
caagttgataggatcagtagtttacacaatgaagtacttgctaatatcctttcattcctaccaacaaaagaagctattgctactagtgttttgtcacgta |
277 |
Q |
| |
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|||||||||||||||||||| |||| ||||| ||| ||||| |||||||||||||||||||||| ||||| ||||| | || |||||||| || | || |
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| T |
34553770 |
caagttgataggatcagtagattaccaaatgaggtaattgcttatatcctttcattcctaccaaccaaagatgctatcacaacaagtgttttatcccata |
34553869 |
T |
|
| Q |
278 |
ggtgggtttctctttggacacttactaattctcttcatttcccagaaaattgtcc---------aacaagaaataactttgttcaaattgtgaaaagtgt |
368 |
Q |
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||||| |||| |||||||| || || || |||||||||||||| | ||||||| ||||| | | ||||||||| | ||| |||| ||||| |
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| T |
34553870 |
ggtggatttcactttggacttttgctgatgctcttcatttcccaaatcattgtccttcctttctaacaaaagagaactttgttgatattatgaacagtgt |
34553969 |
T |
|
| Q |
369 |
cttagctcaaagaaaaccaagttgtatgaaaagagtttcattctctatccacaataactgttatatcccacacttggttagttcaatagtttgcatggca |
468 |
Q |
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| || ||||||| || ||| || || |||||| |||| |||||||||| ||| |||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
34553970 |
cctatctcaaagggaatcaaaatgcatcaaaagactttccttctctatcctcaacaactgttatatccctcacttggttagttcaatagtttccatggca |
34554069 |
T |
|
| Q |
469 |
agtaaacaaaaagt |
482 |
Q |
| |
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| || |||||||| |
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| T |
34554070 |
actactcaaaaagt |
34554083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 77 - 293
Target Start/End: Original strand, 29914536 - 29914750
Alignment:
| Q |
77 |
ggtacgttttcctcttccatttcacctctaattttatttacatttcccatatcccacattaaaacccttgcatggccaaaataaaactagaactagaaga |
176 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| || |||| | ||| |||| | |||||||| || |||| ||||||||| | |
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| T |
29914536 |
ggtacgttttcctcttccatttcacctctaatttcatttattttccccaaacaccattttaacatccttgcatagctaaaaggaaactagaa-------a |
29914628 |
T |
|
| Q |
177 |
acaagttgataggatcagtagtttacac-----aatgaagtacttgctaatatcctttcattcctaccaacaaaagaagctattgctactagtgttttgt |
271 |
Q |
| |
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| |||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
29914629 |
ataagttgatagtatcagtagtttacatgaggaaatgaagtacttgctaaaattctttcattcctagcaacaaaagaagctattgaaactagtgttttgt |
29914728 |
T |
|
| Q |
272 |
cacgtaggtgggtttctctttg |
293 |
Q |
| |
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|||||||||| ||||||||||| |
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| T |
29914729 |
cacgtaggtgtgtttctctttg |
29914750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 77 - 293
Target Start/End: Original strand, 29963689 - 29963903
Alignment:
| Q |
77 |
ggtacgttttcctcttccatttcacctctaattttatttacatttcccatatcccacattaaaacccttgcatggccaaaataaaactagaactagaaga |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| || |||| | ||| |||| | |||||||| || |||| ||||||||| | |
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| T |
29963689 |
ggtacgttttcctcttccatttcacctctaatttcatttattttccccaaacaccattttaacatccttgcatagctaaaaggaaactagaa-------a |
29963781 |
T |
|
| Q |
177 |
acaagttgataggatcagtagtttacac-----aatgaagtacttgctaatatcctttcattcctaccaacaaaagaagctattgctactagtgttttgt |
271 |
Q |
| |
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| |||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
29963782 |
ataagttgatagtatcagtagtttacatgaggaaatgaagtacttgctaaaattctttcattcctagcaacaaaagaagctattgaaactagtgttttgt |
29963881 |
T |
|
| Q |
272 |
cacgtaggtgggtttctctttg |
293 |
Q |
| |
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|||||||||| ||||||||||| |
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| T |
29963882 |
cacgtaggtgtgtttctctttg |
29963903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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