View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17625_low_9 (Length: 462)
Name: NF17625_low_9
Description: NF17625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17625_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 163 - 320
Target Start/End: Original strand, 7667097 - 7667254
Alignment:
| Q |
163 |
tactagccaaccgaatcaacatacaaaagcatcttcttcaggcacaaaggataagaagcatcatggtgtaagagaaactgtagagagaaagataatgttt |
262 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7667097 |
tactagccaaccgaatcaacatgcaaaagcatcttcttcaggtacaaaggataagaagcatcatggtgtaagagaaactgtagagagaaagataatgttt |
7667196 |
T |
|
| Q |
263 |
tccacatcaaactctagcggtaaagacatatcacacgaaagaattgtcccatcaagcg |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7667197 |
tccacatcaaactctagcggtaaagacatatcacacgaaagaattgtcccatcaagcg |
7667254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 163 - 315
Target Start/End: Original strand, 7087326 - 7087478
Alignment:
| Q |
163 |
tactagccaaccgaatcaacatacaaaagcatcttcttcaggcacaaaggataagaagcatcatggtgtaagagaaactgtagagagaaagataatgttt |
262 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7087326 |
tactagccaaccgaatcaacataccaaagcatcttcttcaggcacaaaggataagaagcatcatggtgtaagagaaactgtagagagaaagataatgttt |
7087425 |
T |
|
| Q |
263 |
tccacatcaaactctagcggtaaagacatatcacacgaaagaattgtcccatc |
315 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7087426 |
tccacatcaaactctagtggtaaagacatatcacacgaaagaattgtcccatc |
7087478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 7666948 - 7667030
Alignment:
| Q |
14 |
agacaaaattagatgaggaaatatcaatctaaaaaataacatcaaagtcccctttggaaactcaaaggaagttaccttcaacc |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7666948 |
agacaaaattagatgaggaaatatcaatctaaaaaataacatcaaagtcccctttggaaactcaaaggaagttaccttcaacc |
7667030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 7667312 - 7667373
Alignment:
| Q |
378 |
atgatattacaaagtttgttcataaaatatcagcctcagtgcaaccaacgcagcctatagag |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7667312 |
atgatattacaaagtttgttcataaaatatcagcctcagtgcaaccaacacagcctatagag |
7667373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 7087541 - 7087598
Alignment:
| Q |
378 |
atgatattacaaagtttgttcataaaatatcagcctcagtgcaaccaacgcagcctat |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
7087541 |
atgatattacaaagtttgttcataaaatatcagcctcagtgcaaccaacacaacctat |
7087598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 7087180 - 7087259
Alignment:
| Q |
16 |
acaaaattagatgaggaaatatcaatctaaaaaataacatcaaagtcccctttggaaactcaaaggaagttaccttcaacc |
96 |
Q |
| |
|
|||||| |||||||||||||||||| | |||| ||||| ||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
7087180 |
acaaaactagatgaggaaatatcaacatcaaaactaacaccaaagtcccatttggaaactcaaaggaagtt-ccttcaacc |
7087259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University