View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17626_high_2 (Length: 537)
Name: NF17626_high_2
Description: NF17626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17626_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 272 - 500
Target Start/End: Original strand, 43486247 - 43486474
Alignment:
| Q |
272 |
caagggaaatgctaacgagtgcccccttaggacactatattgtctttgtcaggcttaactgtctgttccatttttaattgtacaaaagttttgccttcct |
371 |
Q |
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| T |
43486247 |
caaggaaaatgctaacgagtgtcct-ttatgacactatattgtctttgtcaggcttaacagtctgttccatttttaattgtaccaaagttttgccttcct |
43486345 |
T |
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| Q |
372 |
taattctctgttacaattgattgaccttgataatatcgaaagtcattcttttatcctttgttttgaaaatgaaaaatatttcacttcataatatgctctg |
471 |
Q |
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| T |
43486346 |
taattctctgttacaattgattgaccttgataatatcgaaagtcattcttttatcctttgttttgaaaatgaaaaatatttcacttcataatatgctctg |
43486445 |
T |
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| Q |
472 |
ctgtgaaattgagacttatgttttgaaag |
500 |
Q |
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| T |
43486446 |
ctgtgaaattgagacttatgttttgaaag |
43486474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 43485995 - 43486179
Alignment:
| Q |
18 |
ttttaagtgttgcagcatttttcaaaaaacggaaatgattgacaatcaagtaatctaaaagtacnnnnnnncagtatgatacacatttaagctatgcatg |
117 |
Q |
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| T |
43485995 |
ttttaagtgttgcagcatttttcaataaacggaaatgattgacaatcaagtaatctaaaagtacaaaaaaacagtatgatacacatttaagctatgcatg |
43486094 |
T |
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| Q |
118 |
atatgtttgttacaagcaacattggtgaaaacgaagatgaaaggtttgcgaaatcccctttgcagatgaagaagaaaaaggatgg |
202 |
Q |
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| T |
43486095 |
atatgtttattacaagcaacattggtgaaaacgaagatgaaaggtttgcgaaatcccctttgcagatgaagaagaaaaaggatgg |
43486179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 47870718 - 47870769
Alignment:
| Q |
150 |
gaagatgaaaggtttgcgaaatcccctt-tgcagatgaagaagaaaaaggat |
200 |
Q |
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| T |
47870718 |
gaagatgaaaagtttgcgatatccccttctgcagatgaagaagaaagaggat |
47870769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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