View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17626_high_5 (Length: 298)
Name: NF17626_high_5
Description: NF17626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17626_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 42 - 290
Target Start/End: Original strand, 29225064 - 29225302
Alignment:
| Q |
42 |
atgtagtatcttttaccttgtactgactggtatggtaccttactacctacgcatcatgcatatagccattaacatttgttgttaaacaata----tattg |
137 |
Q |
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| T |
29225064 |
atgtagtatcttttaccttgtactg----gtatggtaccttac---ctacgcatcat----atagccattaacatttgttgttaaacaataaatatattg |
29225152 |
T |
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| Q |
138 |
caaatttgacttacatagttcattcattattattatgcagctgtggaatccataggagtttgctatggaatgattggaaataatctaccatcaaggcaag |
237 |
Q |
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| T |
29225153 |
caa---tgacttacatagttcattcattattattatgcagctgtggaatccataggagtttgctatggaatgattggaaataatctaccatcaaggcaag |
29225249 |
T |
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| Q |
238 |
atgttgtgaatttatataaatcaagaggcattaaccaaatgcgtatattcttc |
290 |
Q |
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| T |
29225250 |
atgttgtgaatttatataaatcaagaggcattaaccaaatgcgtatattcttc |
29225302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 160 - 281
Target Start/End: Original strand, 29229837 - 29229957
Alignment:
| Q |
160 |
ttcattattattatgcagctgtggaatccataggagtttgctatggaatgattggaaataatctaccatcaaggcaagatgttgtgaatttatataaatc |
259 |
Q |
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| T |
29229837 |
ttcattattat-atgcagctgtggaatccataggagtttgctatgggatgattggaaataatctaccatctaggcaagatgttgtgaatttatatagatc |
29229935 |
T |
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| Q |
260 |
aagaggcattaaccaaatgcgt |
281 |
Q |
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| T |
29229936 |
aagaggcattaaccaaatgcgt |
29229957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 164 - 290
Target Start/End: Original strand, 29234609 - 29234735
Alignment:
| Q |
164 |
ttattattatgcagctgtggaatccataggagtttgctatggaatgattggaaataatctaccatcaaggcaagatgttgtgaatttatataaatcaaga |
263 |
Q |
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| T |
29234609 |
ttattgttacgcagttgtgcaatccgtaggagtttgctatggaatgcttggcaataatctaccatcaaggcaagaagttgtggatttatataagtcaaat |
29234708 |
T |
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| Q |
264 |
ggcattaaccaaatgcgtatattcttc |
290 |
Q |
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| T |
29234709 |
ggcattgactaaatgcgtatatacttc |
29234735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 290
Target Start/End: Original strand, 29240362 - 29240478
Alignment:
| Q |
174 |
gcagctgtggaatccataggagtttgctatggaatgattggaaataatctaccatcaaggcaagatgttgtgaatttatataaatcaagaggcattaacc |
273 |
Q |
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| T |
29240362 |
gcagttgtgcaatccgtaggagtttgctatggagtgcttggcaataatctaccatcaagtcaagaagttgtggacttatataagtcaaatggcattgaca |
29240461 |
T |
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| Q |
274 |
aaatgcgtatattcttc |
290 |
Q |
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| T |
29240462 |
aaatgcgtatatacttc |
29240478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 29250657 - 29250747
Alignment:
| Q |
195 |
gtttgctatggaatgattggaaataatctaccatcaaggcaagatgttgtgaatttatataaatcaagaggcattaaccaaatgcgtatat |
285 |
Q |
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| T |
29250657 |
gtttgctatggagtgcttggcaataatctaccatcaaagcaagaagttgtagatttatataaatcaaaaggcattggcaaaatgcgtatat |
29250747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 29224654 - 29224686
Alignment:
| Q |
18 |
ctcttatcatatatactatatgttatgtagtat |
50 |
Q |
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| T |
29224654 |
ctcttatcatatatactatatgttatgtagtat |
29224686 |
T |
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