View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17626_low_1 (Length: 541)

Name: NF17626_low_1
Description: NF17626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17626_low_1
NF17626_low_1
[»] chr4 (24 HSPs)
chr4 (172-521)||(23415637-23415986)
chr4 (172-450)||(24307224-24307502)
chr4 (168-446)||(23408543-23408821)
chr4 (168-445)||(23453376-23453653)
chr4 (168-445)||(23402071-23402348)
chr4 (172-445)||(23868733-23869006)
chr4 (172-445)||(23885828-23886101)
chr4 (172-452)||(26832736-26833016)
chr4 (172-452)||(26434025-26434305)
chr4 (172-450)||(26435805-26436083)
chr4 (172-445)||(34662045-34662318)
chr4 (13-134)||(23416021-23416142)
chr4 (261-393)||(23451788-23451920)
chr4 (13-134)||(24307065-24307186)
chr4 (13-137)||(23401916-23402040)
chr4 (13-131)||(23453690-23453808)
chr4 (13-137)||(23408852-23408976)
chr4 (13-128)||(23868574-23868689)
chr4 (13-128)||(26832577-26832692)
chr4 (13-128)||(23885669-23885784)
chr4 (13-128)||(26433866-26433981)
chr4 (13-128)||(26435646-26435761)
chr4 (31-120)||(34662370-34662459)
chr4 (381-445)||(31632861-31632925)
[»] chr1 (6 HSPs)
chr1 (172-442)||(41670401-41670671)
chr1 (320-431)||(33216594-33216705)
chr1 (169-416)||(40795767-40796014)
chr1 (172-428)||(29391467-29391723)
chr1 (367-450)||(45576399-45576482)
chr1 (264-300)||(33216558-33216594)
[»] chr7 (3 HSPs)
chr7 (320-443)||(47317431-47317554)
chr7 (172-442)||(40180277-40180547)
chr7 (264-300)||(47317395-47317431)
[»] chr2 (2 HSPs)
chr2 (355-413)||(14715433-14715491)
chr2 (13-53)||(14715357-14715397)
[»] chr8 (1 HSPs)
chr8 (172-297)||(29684701-29684826)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 172 - 521
Target Start/End: Complemental strand, 23415986 - 23415637
Alignment:
Q  172 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 271  Q
    |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  23415986 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg 23415887  T
Q  272 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23415886 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 23415787  T
Q  372 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgaccaagttcactagctcttagacttgaaactttgttgtggtagttttg 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  23415786 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttagacttgaaactttgttgtggtagttttg 23415687  T
Q  472 gtgtttagacatgaaccattaggtttttaaaatttttagtattttacttt 521  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23415686 gtgtttagacatgaaccattaggttttttaaatttttagtattttacttt 23415637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 172 - 450
Target Start/End: Original strand, 24307224 - 24307502
Alignment:
Q  172 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 271  Q
    ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24307224 gaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 24307323  T
Q  272 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 371  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24307324 atatcttcgagaaactagctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgt 24307423  T
Q  372 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgaccaagttcactagctcttagacttga 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  24307424 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttagatttga 24307502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 168 - 446
Target Start/End: Complemental strand, 23408821 - 23408543
Alignment:
Q  168 tgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc 267  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||    
T  23408821 tgtagaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagcgatgggtatcatgaacagtttcatc 23408722  T
Q  268 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  23408721 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagac 23408622  T
Q  368 ttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgaccaagttcactagctcttagac 446  Q
    ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||    
T  23408621 ttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttagac 23408543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 168 - 445
Target Start/End: Complemental strand, 23453653 - 23453376
Alignment:
Q  168 tgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc 267  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||    
T  23453653 tgtagaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc 23453554  T
Q  268 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23453553 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagtc 23453454  T
Q  368 ttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgaccaagttcactagctcttaga 445  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |||||||    
T  23453453 ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttaga 23453376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 168 - 445
Target Start/End: Original strand, 23402071 - 23402348
Alignment:
Q  168 tgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc 267  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||    
T  23402071 tgtagaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc 23402170  T
Q  268 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23402171 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggc 23402270  T
Q  368 ttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgaccaagttcactagctcttaga 445  Q
    |||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||| ||||| |||||||    
T  23402271 ttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttaga 23402348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 172 - 445
Target Start/End: Original strand, 23868733 - 23869006
Alignment:
Q  172 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 271  Q
    |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23868733 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 23868832  T
Q  272 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 371  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23868833 atatcttcgagaaacttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgt 23868932  T
Q  372 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgaccaagttcactagctcttaga 445  Q
    ||||||||||||||||||||| |||||||||||||| || || || |||||||| ||||||||||| |||||||    
T  23868933 tcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttaga 23869006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 172 - 445
Target Start/End: Original strand, 23885828 - 23886101
Alignment:
Q  172 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 271  Q
    |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  23885828 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg 23885927  T
Q  272 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23885928 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggcttgt 23886027  T
Q  372 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgaccaagttcactagctcttaga 445  Q
    |||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||| |||||||    
T  23886028 tcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttaga 23886101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 172 - 452
Target Start/End: Original strand, 26832736 - 26833016
Alignment:
Q  172 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 271  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26832736 gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 26832835  T
Q  272 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 371  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  26832836 atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt 26832935  T
Q  372 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgaccaagttcactagctcttagacttgaaa 452  Q
    ||| || |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||| ||||||    
T  26832936 tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttgaaa 26833016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 172 - 452
Target Start/End: Original strand, 26434025 - 26434305
Alignment:
Q  172 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 271  Q
    |||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26434025 gaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 26434124  T
Q  272 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 371  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  26434125 atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt 26434224  T
Q  372 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgaccaagttcactagctcttagacttgaaa 452  Q
    ||| || |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||| ||||||    
T  26434225 tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttgaaa 26434305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 172 - 450
Target Start/End: Original strand, 26435805 - 26436083
Alignment:
Q  172 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 271  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26435805 gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 26435904  T
Q  272 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 371  Q
    ||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  26435905 atatcttcgagaaactcactcaagaatcttccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt 26436004  T
Q  372 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgaccaagttcactagctcttagacttga 450  Q
    ||| || ||||||||||||||||||| |||||||||||||||||||||||| || ||||| || || ||||||| ||||    
T  26436005 tctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttagatttga 26436083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 172 - 445
Target Start/End: Complemental strand, 34662318 - 34662045
Alignment:
Q  172 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 271  Q
    ||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  34662318 gaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctcaagcaaagccatgggtattatgaacagtttcatcaatg 34662219  T
Q  272 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 371  Q
    |||||||||||||||| ||||||||||| |||||||||||  | || ||||||||||| || || ||||| ||||||||||||||||| || || |||||    
T  34662218 atatcttcgagaagctcgctcaagaatcttccagacttgcaaggtataacaagaagccgacgataacttcgagggaaattcagactgctgttaggcttgt 34662119  T
Q  372 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgaccaagttcactagctcttaga 445  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||| ||||| || ||||| || || |||||||    
T  34662118 tcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttaga 34662045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 23416142 - 23416021
Alignment:
Q  13 gagaagaagccagcggaaaagaaacccgcagaggagaagaagtccaccgttgccgagaaatctccagcagagaagaagccaaaggcagggaagaagctac 112  Q
    ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23416142 gagaagaagccagcggagaagaaaccagctgaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggcagggaagaagctac 23416043  T
Q  113 caaaggaaggtggttccgctgc 134  Q
    |||||||||||||||| |||||    
T  23416042 caaaggaaggtggttcagctgc 23416021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 261 - 393
Target Start/End: Complemental strand, 23451920 - 23451788
Alignment:
Q  261 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 360  Q
    ||||||||| |||||||| |||||||| ||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  23451920 tttcatcaacgatatctttgagaagctcgctcaagaatactccagacttgctcgctacaacaagaagccaacaatcacttcaagggaaattcagaccgca 23451821  T
Q  361 gtcagacttgttcttcctggtgaattggccaag 393  Q
    ||||| |||||||| || |||||||||||||||    
T  23451820 gtcaggcttgttctgcccggtgaattggccaag 23451788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 24307065 - 24307186
Alignment:
Q  13 gagaagaagccagcggaaaagaaacccgcagaggagaagaagtccaccgttgccgagaaatctccagcagagaagaagccaaaggcagggaagaagctac 112  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||  |||| || |||||||||||||||||||| ||||||||||    
T  24307065 gagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaggctcctgctgagaagaagccaaaggcaggaaagaagctac 24307164  T
Q  113 caaaggaaggtggttccgctgc 134  Q
    ||||||||||||||||||||||    
T  24307165 caaaggaaggtggttccgctgc 24307186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 23401916 - 23402040
Alignment:
Q  13 gagaagaagccagcggaaaagaaacccgcagaggagaagaagtccaccgttgccgagaaatctccagcagagaagaagccaaaggcagggaagaagctac 112  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||  |||| || |||||||||||||||||||| ||||||||||    
T  23401916 gagaagaagccagcggagaagaaacccgctgaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagccaaaggcaggaaagaagctac 23402015  T
Q  113 caaaggaaggtggttccgctgcagg 137  Q
    |||||||||||||||| || |||||    
T  23402016 caaaggaaggtggttctgcagcagg 23402040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 23453808 - 23453690
Alignment:
Q  13 gagaagaagccagcggaaaagaaacccgcagaggagaagaagtccaccgttgccgagaaatctccagcagagaagaagccaaaggcagggaagaagctac 112  Q
    ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| |    
T  23453808 gagaagaagccagcggagaagaaacctgctgaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggctggaaagaagcttc 23453709  T
Q  113 caaaggaaggtggttccgc 131  Q
    | ||||||||||| |||||    
T  23453708 ctaaggaaggtggctccgc 23453690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 23408976 - 23408852
Alignment:
Q  13 gagaagaagccagcggaaaagaaacccgcagaggagaagaagtccaccgttgccgagaaatctccagcagagaagaagccaaaggcagggaagaagctac 112  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||  |||| || ||||||||||| |||||||| ||||||||||    
T  23408976 gagaagaagccagcggagaagaaacccgctgaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagcccaaggcaggaaagaagctac 23408877  T
Q  113 caaaggaaggtggttccgctgcagg 137  Q
    |||||||||||||||| || |||||    
T  23408876 caaaggaaggtggttctgcagcagg 23408852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 23868574 - 23868689
Alignment:
Q  13 gagaagaagccagcggaaaagaaacccgcagaggagaagaagtccaccgttgccgagaaatctccagcagagaagaagccaaaggcagggaagaagctac 112  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||||| ||||| || |||||||| |    
T  23868574 gagaagaagccagcggagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttc 23868673  T
Q  113 caaaggaaggtggttc 128  Q
    ||||||||||||||||    
T  23868674 caaaggaaggtggttc 23868689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 26832577 - 26832692
Alignment:
Q  13 gagaagaagccagcggaaaagaaacccgcagaggagaagaagtccaccgttgccgagaaatctccagcagagaagaagccaaaggcagggaagaagctac 112  Q
    |||||||||||||| || |||||||| ||||||||||||||||||||||| || |||||| |||| || ||||||||||||||||| || |||||||| |    
T  26832577 gagaagaagccagcagagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccaaaggccggaaagaagcttc 26832676  T
Q  113 caaaggaaggtggttc 128  Q
    ||||||||||||||||    
T  26832677 caaaggaaggtggttc 26832692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 23885669 - 23885784
Alignment:
Q  13 gagaagaagccagcggaaaagaaacccgcagaggagaagaagtccaccgttgccgagaaatctccagcagagaagaagccaaaggcagggaagaagctac 112  Q
    |||||||||||||| || |||||||| || |||||||||||||||||||| ||||||||| |||| || ||||||||||| ||||| || |||||||| |    
T  23885669 gagaagaagccagcagagaagaaaccagctgaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttc 23885768  T
Q  113 caaaggaaggtggttc 128  Q
    ||||||||||||||||    
T  23885769 caaaggaaggtggttc 23885784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 26433866 - 26433981
Alignment:
Q  13 gagaagaagccagcggaaaagaaacccgcagaggagaagaagtccaccgttgccgagaaatctccagcagagaagaagccaaaggcagggaagaagctac 112  Q
    |||||||||||||| || |||||||| ||||||||||||||||||||||| || |||||| |||| || ||||||||||| ||||| || |||||||| |    
T  26433866 gagaagaagccagcagagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttc 26433965  T
Q  113 caaaggaaggtggttc 128  Q
    ||||||||||||||||    
T  26433966 caaaggaaggtggttc 26433981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 26435646 - 26435761
Alignment:
Q  13 gagaagaagccagcggaaaagaaacccgcagaggagaagaagtccaccgttgccgagaaatctccagcagagaagaagccaaaggcagggaagaagctac 112  Q
    |||||||||||||| || |||||||| ||||||||||||||||||||||| || |||||| |||| || ||||||||||| ||||| || |||||||| |    
T  26435646 gagaagaagccagcagagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttc 26435745  T
Q  113 caaaggaaggtggttc 128  Q
    ||||||||||||||||    
T  26435746 caaaggaaggtggttc 26435761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 34662459 - 34662370
Alignment:
Q  31 aagaaacccgcagaggagaagaagtccaccgttgccgagaaatctccagcagagaagaagccaaaggcagggaagaagctaccaaaggaa 120  Q
    |||||||| |||||||||||||| |||||||| ||||||||| |||| |||||||||||||||||||| || |||||||| |||||||||    
T  34662459 aagaaacctgcagaggagaagaaatccaccgtcgccgagaaagctccggcagagaagaagccaaaggccggaaagaagcttccaaaggaa 34662370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 445
Target Start/End: Original strand, 31632861 - 31632925
Alignment:
Q  381 tgaattggccaagcatgctgtttctgagggtaccaaggctgtgaccaagttcactagctcttaga 445  Q
    ||||||||| ||||||| ||||| |||||||||||| | ||||||||| ||||| ||||||||||    
T  31632861 tgaattggctaagcatgttgtttgtgagggtaccaaagttgtgaccaaattcacaagctcttaga 31632925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 172 - 442
Target Start/End: Original strand, 41670401 - 41670671
Alignment:
Q  172 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 271  Q
    ||||| |||||||||||||| ||||| ||||| || || ||||| || |||||||||||||||||||| || ||||| || |||||||| ||||||||||    
T  41670401 gaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatcaatg 41670500  T
Q  272 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 371  Q
    ||||||| |||||||| ||||| ||||| |||||||||||  | |||||||||||||| |||||||||||  |||| || |||||||| ||  | |||||    
T  41670501 atatctttgagaagctcgctcaggaatcttccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgtcttgt 41670600  T
Q  372 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgaccaagttcactagctctt 442  Q
    ||| || |||||| | || ||||||||||| |||||||| ||||||||||| ||||| |||||||||||||    
T  41670601 tctccccggtgaacttgctaagcatgctgtctctgagggaaccaaggctgttaccaaattcactagctctt 41670671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 320 - 431
Target Start/End: Original strand, 33216594 - 33216705
Alignment:
Q  320 acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggc 419  Q
    |||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  33216594 acaagaagccaacaatcacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggc 33216693  T
Q  420 tgtgaccaagtt 431  Q
    ||||||||||||    
T  33216694 tgtgaccaagtt 33216705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 169 - 416
Target Start/End: Original strand, 40795767 - 40796014
Alignment:
Q  169 gtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca 268  Q
    |||||||| |||||||||||||| ||||| ||||| || || ||||| || |||||||| ||||| ||||| || ||||| || ||||||||||||||||    
T  40795767 gtagaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggaatctccagcaaggctatggggatcatgaacagtttcatca 40795866  T
Q  269 atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagact 368  Q
    |||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| || || ||||| ||  | || ||||||||||| ||  | ||    
T  40795867 atgacatctttgagaagctcgctcaggaatcatccagactcgctcgctacaacaagaaacctaccatcacctctcgtgagattcagactgctgttcgtct 40795966  T
Q  369 tgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaa 416  Q
     |||||||| || ||| | |||||||| ||||| || ||||| |||||    
T  40795967 cgttcttcccggcgaacttgccaagcacgctgtctccgagggaaccaa 40796014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 172 - 428
Target Start/End: Original strand, 29391467 - 29391723
Alignment:
Q  172 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 271  Q
    ||||| || ||||| ||||| ||||| ||||| ||||| ||||| || || || ||||| ||   |||||| ||||| || |||||||||||||||||||    
T  29391467 gaaacctataagatttacatcttcaaggttctcaaacaggttcatcctgatataggtatttcttccaaagctatggggattatgaacagtttcatcaatg 29391566  T
Q  272 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 371  Q
    ||||||| ||||| || ||||| ||| | || ||| | ||||||||||||||||| || || || || || ||||| ||||| || || ||  |  | ||    
T  29391567 atatctttgagaaactcgctcaggaagcttctagattggctcgttacaacaagaaaccgacgattacgtcgagggagattcaaacggctgtgcgtttggt 29391666  T
Q  372 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgaccaa 428  Q
    |||||| ||||||||||| || ||||||||||| || || ||||||||||| |||||    
T  29391667 tcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgttaccaa 29391723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 367 - 450
Target Start/End: Original strand, 45576399 - 45576482
Alignment:
Q  367 cttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgaccaagttcactagctcttagacttga 450  Q
    |||||||| || | ||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||| |||||||||| ||||    
T  45576399 cttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttagatttga 45576482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 33216558 - 33216594
Alignment:
Q  264 catcaatgatatcttcgagaagcttgctcaagaatca 300  Q
    ||||||||||||||||| |||||||||||||||||||    
T  33216558 catcaatgatatcttcgtgaagcttgctcaagaatca 33216594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 320 - 443
Target Start/End: Original strand, 47317431 - 47317554
Alignment:
Q  320 acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggc 419  Q
    |||||||||||||||||||||||||||||||||| ||||  ||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| ||    
T  47317431 acaagaagccaacaatcacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagc 47317530  T
Q  420 tgtgaccaagttcactagctctta 443  Q
    |||||||||||| ||||| |||||    
T  47317531 tgtgaccaagtttactagttctta 47317554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 172 - 442
Target Start/End: Complemental strand, 40180547 - 40180277
Alignment:
Q  172 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 271  Q
    ||||| |||||||| ||||| ||||| ||||||||||| ||||| || || || ||| | |||||||| || |||||||| |||||||||||||| || |    
T  40180547 gaaacctacaagatatacatcttcaaggttctgaaacaggttcatcctgatatcggtgtttcaagcaaggctatgggaatcatgaacagtttcattaacg 40180448  T
Q  272 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 371  Q
    ||||||| ||||| || ||||| ||||| ||  |  | ||| | || ||||||||||| || || ||||| ||||| ||||| ||||| || ||| | ||    
T  40180447 atatctttgagaaactcgctcaggaatcgtctcgtttggctaggtataacaagaagccgacgattacttctagggagattcaaactgctgttagattggt 40180348  T
Q  372 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgaccaagttcactagctctt 442  Q
    ||||||||| |||||||| || |||||||||||||| || || |||||||| ||||| ||||| |||||||    
T  40180347 tcttcctggagaattggctaaacatgctgtttctgaagggactaaggctgttaccaaattcaccagctctt 40180277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 47317395 - 47317431
Alignment:
Q  264 catcaatgatatcttcgagaagcttgctcaagaatca 300  Q
    ||||||||||||||||| |||||||||||||||||||    
T  47317395 catcaatgatatcttcgtgaagcttgctcaagaatca 47317431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 355 - 413
Target Start/End: Original strand, 14715433 - 14715491
Alignment:
Q  355 actgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtac 413  Q
    |||||||| ||||||||||||||||| |||||||||||||||| ||| |||||||||||    
T  14715433 actgcagtgagacttgttcttcctggagaattggccaagcatgttgtgtctgagggtac 14715491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 14715357 - 14715397
Alignment:
Q  13 gagaagaagccagcggaaaagaaacccgcagaggagaagaa 53  Q
    |||||||||||||| || |||||||||||||||||||||||    
T  14715357 gagaagaagccagctgagaagaaacccgcagaggagaagaa 14715397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 297
Target Start/End: Original strand, 29684701 - 29684826
Alignment:
Q  172 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 271  Q
    ||||| |||||||| || |||||||| ||||| ||||||||||| || | ||||||| | ||||| ||||| |||||| | || ||||||||| | || |    
T  29684701 gaaacctacaagatatatatattcaaggttctcaaacaagttcatcctgccattggtgtttcaagtaaagctatgggagttattaacagtttcgtgaacg 29684800  T
Q  272 atatcttcgagaagcttgctcaagaa 297  Q
    |||||||  |||| || |||||||||    
T  29684801 atatctttaagaaactcgctcaagaa 29684826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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