View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17626_low_3 (Length: 495)

Name: NF17626_low_3
Description: NF17626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17626_low_3
NF17626_low_3
[»] chr3 (2 HSPs)
chr3 (24-476)||(39712481-39712933)
chr3 (24-421)||(11528147-11528541)
[»] chr2 (5 HSPs)
chr2 (116-404)||(28166469-28166751)
chr2 (116-404)||(44905314-44905596)
chr2 (216-397)||(37952509-37952690)
chr2 (187-438)||(37896715-37896966)
chr2 (26-405)||(37958066-37958442)
[»] chr7 (1 HSPs)
chr7 (116-404)||(38757450-38757732)
[»] chr4 (2 HSPs)
chr4 (116-404)||(11148981-11149263)
chr4 (122-404)||(34538932-34539208)
[»] chr1 (2 HSPs)
chr1 (189-404)||(13228303-13228518)
chr1 (122-396)||(40768428-40768695)


Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 24 - 476
Target Start/End: Complemental strand, 39712933 - 39712481
Alignment:
Q  24 aaaaaccttttattcgctgcaccgaagaagactccgtctccttcaccatcgtcgaatcctcgtcagatttcaaccatctctcaaacaaataccacctgaa 123  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  39712933 aaaaaccttttattcgctgcaccgaagaagactccgtcttcttcaccatcgttgaatcctcgtcagatttcaaccatctctcaaacaaacaccacctgaa 39712834  T
Q  124 aaatctcaaagaaaataatcaccttgctccaatattaacacacaaaactagggttgaagatattaataacattgaaaatgacacattcactcttccattg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39712833 aaatctcaaagaaaataatcaccttgctccaatattaacacacaaaactagggttgaagatattaatgacattgaaaatgacacattcactcttccattg 39712734  T
Q  224 ttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcatttcatgaaat 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712733 ttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcatttcatgaaat 39712634  T
Q  324 cttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgatagagaagttttgaaggaccctagaggacttgaggatct 423  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712633 cttggtcttttatccatcaaggaggtgatgcagctgaattgaagtcactaccttgttttgatagagaagttttgaaggaccctagaggacttgaggatct 39712534  T
Q  424 tattttaagagattannnnnnnacaagaaaatcatggaagtttagactcattg 476  Q
    |||||||||||||||       |||||||||||||||||||||||||||||||    
T  39712533 tattttaagagattatttttttacaagaaaatcatggaagtttagactcattg 39712481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 24 - 421
Target Start/End: Complemental strand, 11528541 - 11528147
Alignment:
Q  24 aaaaaccttttattcgctgcaccgaagaagactccgtctccttcaccatcgtcgaatcctcgtcagatttcaaccatctctcaaacaaataccacctgaa 123  Q
    ||||||||||||||| || ||||||||||||||| ||| |||| |||||| ||||||||||  ||||||||||||||||||| | |||| | | ||||||    
T  11528541 aaaaaccttttattctctacaccgaagaagactctgtcgcctttaccatcatcgaatcctcagcagatttcaaccatctctcgaccaaacaacccctgaa 11528442  T
Q  124 aaatctcaaagaaaataatcaccttgctccaatattaacacacaaaactagggttgaagatattaataacattgaaaatgacacattcactcttccattg 223  Q
    |||||||||||||| ||||||||||| ||||| ||||||| ||||||  | | |||| ||||   |||||||||||||||||||||||| ||||||||||    
T  11528441 aaatctcaaagaaactaatcaccttgttccaacattaacaaacaaaaacaagtttgatgata---ataacattgaaaatgacacattcattcttccattg 11528345  T
Q  224 ttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcatttcatgaaat 323  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||| ||||||||||||| ||  |||||| |||||||||||||||    
T  11528344 ttggctttgcaagtcacagtttttcccgaccatggtctttgcattggcatcacatattgtcacgtgatggatgatagaagttgcgatcatttcatgaaat 11528245  T
Q  324 cttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgatagagaagttttgaaggaccctagaggacttgaggat 421  Q
    |||||||||||||||||||| ||||||| | || ||||||||| ||||||||||||||||| ||||||||||||| |||||| |||||||||||||||    
T  11528244 cttggtcttttatccatcaaagaggtgatgtagttgaattgaaatcactaccttgttttgacagagaagttttgagggacccaagaggacttgaggat 11528147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 116 - 404
Target Start/End: Complemental strand, 28166751 - 28166469
Alignment:
Q  116 cacctgaaaaatctcaaagaaaataatcaccttgctccaatattaacacacaaaactagggttgaagatattaataacattgaaaatgacacattcactc 215  Q
    ||||| |||||||||||| ||| ||||||||||| ||||| |||||||| ||||| || | |||| ||||      |||||||||||||||||||||  |    
T  28166751 cacctaaaaaatctcaaataaactaatcaccttgttccaaaattaacacgcaaaaataagtttgatgata------acattgaaaatgacacattcatcc 28166658  T
Q  216 ttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcattt 315  Q
    |||||||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||    
T  28166657 ttccattgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgccacgtgatggatgataatagttgcaatcattt 28166558  T
Q  316 catgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgatagagaagttttgaaggacc 404  Q
    |||||||||||||||||||||||||||||||||  | | || ||||||||||||| ||||||||||||| ||||||||||||| |||||    
T  28166557 catgaaatcttggtcttttatccatcaaggaggaaatgtagttgaattgaagtcattaccttgttttgacagagaagttttgagggacc 28166469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 116 - 404
Target Start/End: Complemental strand, 44905596 - 44905314
Alignment:
Q  116 cacctgaaaaatctcaaagaaaataatcaccttgctccaatattaacacacaaaactagggttgaagatattaataacattgaaaatgacacattcactc 215  Q
    ||||| |||||||||||| ||| ||||||||||| ||||| ||||||||||||||  | | |||| ||||      |||||||||||||||||||||  |    
T  44905596 cacctaaaaaatctcaaataaactaatcaccttgttccaaaattaacacacaaaaacaagtttgatgata------acattgaaaatgacacattcatcc 44905503  T
Q  216 ttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcattt 315  Q
    |||||||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||    
T  44905502 ttccattgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgccacgtgatggatgataatagttgcaatcattt 44905403  T
Q  316 catgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgatagagaagttttgaaggacc 404  Q
    |||||||||||||||||||||||||||||||||  | | || |||||||||||||||| |||||||||| ||||||||||||| |||||    
T  44905402 catgaaatcttggtcttttatccatcaaggaggaaatgtagttgaattgaagtcactatcttgttttgacagagaagttttgagggacc 44905314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 216 - 397
Target Start/End: Original strand, 37952509 - 37952690
Alignment:
Q  216 ttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcattt 315  Q
    |||| |||||| ||||||||||| | ||||| |||||||||||| ||||||||| ||| | ||||||||| |||||||||| |||| |||||||||||||    
T  37952509 ttccgttgttgtctttgcaagtcacggttttccccaaccatggtctttgcattgccatcaaatattgccatgtgatggatgataactgttgcaatcattt 37952608  T
Q  316 catgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgatagagaagttttg 397  Q
     |||||||||||||||||||||||||    |||||| | || ||| || ||||| | |||||||||||| ||| ||||||||    
T  37952609 aatgaaatcttggtcttttatccatcgtaaaggtgatgtagttgacttcaagtcgcaaccttgttttgacagacaagttttg 37952690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 187 - 438
Target Start/End: Complemental strand, 37896966 - 37896715
Alignment:
Q  187 taataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccac 286  Q
    |||| ||||||||||| ||||||||| | | || ||||||||||||||||  || ||||| || ||||||||| |||||||||  || |||||||| ||     
T  37896966 taatgacattgaaaataacacattcattttccctttgttggctttgcaagcttctgttttccctaaccatggtctttgcattgcaatcacatattgtcat 37896867  T
Q  287 gtgatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgata 386  Q
    || ||||||| ||   |||| | ||||||||||||||||||||||||||| |||  |    |||||| || ||| |||||||||  ||||||||||||||    
T  37896866 gtaatggatgatagttgttgtagtcatttcatgaaatcttggtcttttatgcatagaaattgtgaagtagttgacttgaagtcaacaccttgttttgata 37896767  T
Q  387 gagaagttttgaaggaccctagaggacttgaggatcttattttaagagatta 438  Q
    || || |||| | |||||| | ||| |||||  || || | |||||||||||    
T  37896766 gaaaaatttttagggacccaaaagggcttgaaaatgttttcttaagagatta 37896715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 405
Target Start/End: Original strand, 37958066 - 37958442
Alignment:
Q  26 aaaccttttattcgctgcaccgaagaagactccgtctccttcaccatcgtcgaatcctcgtcagatttcaaccatctctcaaacaaataccacctgaaaa 125  Q
    |||||||||||||  |||||  || | ||||| ||| | || |||||||||||||||||| |||||||||||||||| |||| |||  ||||||  ||||    
T  37958066 aaaccttttattctttgcactcaaaatgactctgtcgcttttaccatcgtcgaatcctcggcagatttcaaccatctatcaaccaatcaccaccccaaaa 37958165  T
Q  126 atctcaaagaaaataatcaccttgctccaatattaacacacaaaactagggttgaagatattaataacattgaaaatgacacattcactcttccattgtt 225  Q
    |||| |||||  ||||| | |||  ||||| |||||  | |||||| |    ||| | ||   || ||||||| ||| ||||||||| | | || |||||    
T  37958166 atcttaaagactataattatcttagtccaaaattaagccgcaaaacaacctatgatggta---atgacattgagaataacacattcattttccctttgtt 37958262  T
Q  226 ggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcatttcatgaaatct 325  Q
    | |||||||||  || ||||| || ||||||||| |||||||||  || |||||||| || || ||||||| ||   |||| | |||||||||||| |||    
T  37958263 gtctttgcaagcttctgttttccctaaccatggtctttgcattgcaatcacatattgtcatgtaatggatgatagttgttgtagtcatttcatgaagtct 37958362  T
Q  326 tggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgatagagaagttttgaaggaccc 405  Q
    ||||||||||| |||  |    |||||| || ||| |||||||||   ||||||||||||||| |  |||||| ||||||    
T  37958363 tggtcttttatacatagaaattgtgaagtagttgacttgaagtcaactccttgttttgatagaaattttttgagggaccc 37958442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 116 - 404
Target Start/End: Complemental strand, 38757732 - 38757450
Alignment:
Q  116 cacctgaaaaatctcaaagaaaataatcaccttgctccaatattaacacacaaaactagggttgaagatattaataacattgaaaatgacacattcactc 215  Q
    ||||| |||||||||||| ||| ||||||||||| ||||| ||||||||||||||  | | |||| ||||      |||||||||||||||||||||  |    
T  38757732 cacctaaaaaatctcaaataaactaatcaccttgttccaaaattaacacacaaaaacaagtttgatgata------acattgaaaatgacacattcatcc 38757639  T
Q  216 ttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcattt 315  Q
    |||||||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| |||||||| ||| ||||||||| ||| ||||||||||||||    
T  38757638 ttccattgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgacacatgatggatgataatagttgcaatcattt 38757539  T
Q  316 catgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgatagagaagttttgaaggacc 404  Q
    |||||||||||||||||||||||||||||||||  | | || ||||||||||||||||||||||||||| ||||||||||||| |||||    
T  38757538 catgaaatcttggtcttttatccatcaaggaggaaatgtagttgaattgaagtcactaccttgttttgacagagaagttttgagggacc 38757450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 116 - 404
Target Start/End: Original strand, 11148981 - 11149263
Alignment:
Q  116 cacctgaaaaatctcaaagaaaataatcaccttgctccaatattaacacacaaaactagggttgaagatattaataacattgaaaatgacacattcactc 215  Q
    ||||| |||||||||||| ||| ||||||||||  ||||| |||||||||||||| || | || | ||||      |||||||||||||||||||||  |    
T  11148981 cacctaaaaaatctcaaataaactaatcaccttattccaaaattaacacacaaaaataagtttaatgata------acattgaaaatgacacattcatcc 11149074  T
Q  216 ttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcattt 315  Q
    |||| ||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||    
T  11149075 ttccgttgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgccacatgatggatgataatagttgcaatcattt 11149174  T
Q  316 catgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgatagagaagttttgaaggacc 404  Q
    |||||||||||||||||||||||||||||||||  | | || |||||||||| |||||||||||||||||||||||||||||| |||||    
T  11149175 catgaaatcttggtcttttatccatcaaggaggaaatgtagttgaattgaagacactaccttgttttgatagagaagttttgagggacc 11149263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 122 - 404
Target Start/End: Complemental strand, 34539208 - 34538932
Alignment:
Q  122 aaaaatctcaaagaaaataatcaccttgctccaatattaacacacaaaactagggttgaagatattaataacattgaaaatgacacattcactcttccat 221  Q
    |||||||||||| ||| ||||||||||| ||||| ||||||||||||||  | | |||| ||||      |||||||||||||||||||||  |||||||    
T  34539208 aaaaatctcaaataaactaatcaccttgttccaaaattaacacacaaaaacaagtttgatgata------acattgaaaatgacacattcatccttccat 34539115  T
Q  222 tgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcatttcatgaa 321  Q
    |||| |||||||||||| ||||||||||  |||||||| ||||||||||||| |||||||| | ||||||||||| ||| ||||||||||||||||||||    
T  34539114 tgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgtcccgtgatggatgataatagttgcaatcatttcatgaa 34539015  T
Q  322 atcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgatagagaagttttgaaggacc 404  Q
    || ||| ||||||||||||||||||||  | | || ||||||||||||||||||||||||||| | ||||||||||| |||||    
T  34539014 atattgatcttttatccatcaaggaggaaatgtagttgaattgaagtcactaccttgttttgacaaagaagttttgagggacc 34538932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 189 - 404
Target Start/End: Original strand, 13228303 - 13228518
Alignment:
Q  189 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 288  Q
    |||||||||||||||||||| |||  ||||||||||| |||||||||||| |||||||||   |||||||| ||||||||||||| ||||||||||||||    
T  13228303 ataacattgaaaatgacacaatcatccttccattgttagctttgcaagtcacagtttttcttgaccatggtatttgcattggcatcacatattgccacgt 13228402  T
Q  289 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgataga 388  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||  | | || ||||||||||||||||||||||||||| |||    
T  13228403 gatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccataaaggaggaaatgtagttgaattgaagtcactaccttgttttgacaga 13228502  T
Q  389 gaagttttgaaggacc 404  Q
    |||||||||| |||||    
T  13228503 gaagttttgagggacc 13228518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 122 - 396
Target Start/End: Complemental strand, 40768695 - 40768428
Alignment:
Q  122 aaaaatctcaaagaaaataatcaccttgctccaatattaacacacaaaactagggttgaagatattaataacattgaaaatgacacattcactcttccat 221  Q
    |||||||||||| ||| ||||||||||  ||||| |||||||||||||| || | |||| ||||      |||||||||||||||||||||  |||||||    
T  40768695 aaaaatctcaaataaactaatcaccttt-tccaaaattaacacacaaaaataagtttgatgata------acattgaaaatgacacattcatccttccat 40768603  T
Q  222 tgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcatttcatgaa 321  Q
    |||| |||||||||||| |||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||||    
T  40768602 tgttagctttgcaagtcacagtttttcctaaccatggtatttgcattggcatcacatattgccacgtgatggatgataatagttgcaatcattttatgaa 40768503  T
Q  322 atcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcactaccttgttttgatagagaagtttt 396  Q
    ||||||||||||||||||||||||||   | | || | ||||||||||||| ||||||||||| |||||||||||    
T  40768502 atcttggtcttttatccatcaaggagaaaatgtagttaaattgaagtcactgccttgttttgacagagaagtttt 40768428  T

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