View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17626_low_4 (Length: 455)
Name: NF17626_low_4
Description: NF17626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17626_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 149 - 317
Target Start/End: Original strand, 30342411 - 30342580
Alignment:
| Q |
149 |
ataaaaacacatttaatttgagatgaaatttgtcacagagacctc-tcagctagtaaagtaaaagttcttataacaacattgaatataacctactaaaca |
247 |
Q |
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| T |
30342411 |
ataaaaacacattaaatttgagatgaaatttgtcagagacacctcctcagctagtaaagtaaaagttcttataacaacattgaatataacctactaaaga |
30342510 |
T |
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| Q |
248 |
aaaagagtaacagaaactaaagaaagaatgtaaacatcaaattacctgatttccgaagaatttcgtaaag |
317 |
Q |
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| T |
30342511 |
aaaaaagtaacagaaactaaagaaagaatgtaaacatcaaattacctgatttccgaggaatttcgcaaag |
30342580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 320 - 437
Target Start/End: Original strand, 30343773 - 30343890
Alignment:
| Q |
320 |
cataccatgattcgcaacactgatttccctacaataacaggacattcagtactatatgattgaaaagaaatagttgtgaacttctgcgaaagagtgtata |
419 |
Q |
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| T |
30343773 |
cataccatgattagcaacactgatttccctacaataagaggacattcagtactatatgattgaaaagaaatagttgtgaacttctgcgaaagagtgtata |
30343872 |
T |
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| Q |
420 |
gaaatgcttggttaaacc |
437 |
Q |
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| T |
30343873 |
gaaatgcttggttaaacc |
30343890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 29219189 - 29219329
Alignment:
| Q |
13 |
acctgtgaagtgaagagttcaaaggaaacttctattatacaaatttagagtattcttcagtagtcagtatcttcttaggagtgacattatatgtggcaac |
112 |
Q |
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| T |
29219189 |
acctgtgaagcgaagagttcaatggcaacttctattatacaa-tatagagtattcttcagtagtcagtaccttcataggagtgacattatatgtagaaac |
29219287 |
T |
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| Q |
113 |
accggttatcggagtagaacttttgctttctgcggtataaaa |
154 |
Q |
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| T |
29219288 |
accggttattggagtagaactttggttttctacggtataaaa |
29219329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 21332558 - 21332693
Alignment:
| Q |
16 |
tgtgaagtgaagagttcaaaggaaacttctattatacaaatttagagtattcttcagtagtcagtatcttcttaggagtgacattatatgtggcaacacc |
115 |
Q |
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| T |
21332558 |
tgtgaagtgaagagttcaatagcaacttctattatacaa---tagagtattattcagtagttggtaccttcataggagtgacattatatgtagaaacacc |
21332654 |
T |
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| Q |
116 |
ggttatcggagtagaacttttgctttctgcggtataaaa |
154 |
Q |
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| T |
21332655 |
ggttatcggagtagaactttggttttctgcggtataaaa |
21332693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 222 - 317
Target Start/End: Original strand, 29220876 - 29220971
Alignment:
| Q |
222 |
caacattgaatataacctactaaacaaaaagagtaacagaaactaaagaaagaatgtaaacatcaaattacctgatttccgaagaatttcgtaaag |
317 |
Q |
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||||||||| |||||||||||||| ||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||| | |||||||| |||| |
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| T |
29220876 |
caacattgactataacctactaaagaaaaagagtaacaaaaacttaagaaagaacgtaagcatcaaattacctgatttctggggaatttcgcaaag |
29220971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 374
Target Start/End: Original strand, 29221016 - 29221070
Alignment:
| Q |
320 |
cataccatgattcgcaacactgatttccctacaataacaggacattcagtactat |
374 |
Q |
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| T |
29221016 |
cataccatgattagcaacaatgatttccctacaataacaggacattcattactat |
29221070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 29220759 - 29220830
Alignment:
| Q |
149 |
ataaaaacacatttaatttgagatgaaatttgtcacagagacctc-tcagctagtaaagtaaaagttcttat |
219 |
Q |
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|||||||| |||| |||||| || |||||||||| |||| |||| |||||||||||||||||||||||||| |
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| T |
29220759 |
ataaaaacgcattaaatttgtgagaaaatttgtcatagaggcctcctcagctagtaaagtaaaagttcttat |
29220830 |
T |
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