View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17627_high_10 (Length: 388)
Name: NF17627_high_10
Description: NF17627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17627_high_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 129 - 388
Target Start/End: Original strand, 31658583 - 31658842
Alignment:
| Q |
129 |
ccaatgccaaactttgaaaataaatttacacttagacagaaacatatccatagccatcaaaatcctaactggtcataaacattctcaaattcaaatgatt |
228 |
Q |
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| T |
31658583 |
ccaatgccaaactttgaaaataaatttacacttagacagaaacatatccatagccatcaaaatcctaactggtcataaacattctcaaattcaaatgatt |
31658682 |
T |
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| Q |
229 |
caatcgatgatagcatagtggcatgtctcaaataatcaaaacaaaattcaaagttacatgatatgaggttatctgatgagaacaattgattttgagaaga |
328 |
Q |
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| T |
31658683 |
caatcgatgatagcatagtggcacgtctcaaataatcaaaataaacttcaaagttacatgatatgaggttatctgatgagaacaattgattttgagaaga |
31658782 |
T |
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| Q |
329 |
ataatcatcatgaatctcttccttaggatcccctattgtagatgcaagaaatggcaatgg |
388 |
Q |
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| T |
31658783 |
ataatcatcatgaatctcttccttaggatcctcttttgtagatgcaagaaatggcaatgg |
31658842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 209 - 388
Target Start/End: Complemental strand, 31650553 - 31650374
Alignment:
| Q |
209 |
attctcaaattcaaatgattcaatcgatgatagcatagtggcatgtctcaaataatcaaaacaaaattcaaagttacatgatatgaggttatctgatgag |
308 |
Q |
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||||||||||| ||| |||||| |||||||| | | || |||||||||||||||||||| ||| ||||| | ||| || ||| || || | |||| |
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| T |
31650553 |
attctcaaattaaaaagattcactcgatgatgactcactgacatgtctcaaataatcaaaataaacatcaaaatcgcataattggagattctccggtgag |
31650454 |
T |
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| Q |
309 |
aacaattgattttgagaagaataatcatcatgaatctcttccttaggatcccctattgtagatgcaagaaatggcaatgg |
388 |
Q |
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| T |
31650453 |
aacaattggttttgaggaaaatgatcatgatgtatctcttccttgggatctccttttgtagatgcaagaagtggcaatgg |
31650374 |
T |
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