View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17627_high_11 (Length: 387)
Name: NF17627_high_11
Description: NF17627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17627_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 21 - 362
Target Start/End: Complemental strand, 30511935 - 30511594
Alignment:
| Q |
21 |
acatcatcagtgccacattagcatccaatggacgattgacatgtggcaaggaagaaaaacaaaaataaatannnnnnnaagaagtcaaactagcctgtta |
120 |
Q |
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| T |
30511935 |
acatcatcagtgccacattagcgtccaatggacgactgacatgtggcaaggaagaaaaacaaaaataaacatttttttaagaagtcaaactagcttgcta |
30511836 |
T |
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| Q |
121 |
aagttgacatagaatcgaacttaaaaccttgagataagctctaaggtccatgccaccaccaccaactcaggtggattaaaaactacataattattgcgat |
220 |
Q |
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| T |
30511835 |
aagttgacatagaatcgaacttgaaaccttgagatgagctctaaggcccatgccaacaccaccaactcaggtggattaaaaacaacataattattgcgat |
30511736 |
T |
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| Q |
221 |
caaacacaaaaacaataaattccagagactaaaagcataaattaccccnnnnnnnnctttactataacacttaccttcatatcaatttaatggtcatgga |
320 |
Q |
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| T |
30511735 |
caaacacaaaaactataaattccagagactaaaagcataaattaccccaaaaaaaactttactataacacttaccttcatatcaatttaatggtcatgga |
30511636 |
T |
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| Q |
321 |
atcattatttgttggaatagcccaatttaagctaagtttgat |
362 |
Q |
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| T |
30511635 |
atcattatttgttggaatagcccaatttaagctaagtttgat |
30511594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 278 - 362
Target Start/End: Complemental strand, 30494410 - 30494326
Alignment:
| Q |
278 |
tttactataacacttaccttcatatcaatttaatggtcatggaatcattatttgttggaatagcccaatttaagctaagtttgat |
362 |
Q |
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| T |
30494410 |
tttactatagtactcaccttcatatcaatttaatgatcatggaaccattatttgttcgaatagcccgatttgagttaagtttgat |
30494326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 30532777 - 30532733
Alignment:
| Q |
41 |
gcatccaatggacgattgacatgtggcaaggaagaaaaacaaaaa |
85 |
Q |
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| T |
30532777 |
gcatccaatgggagactgacatgtggcaaggaagaaaaacaaaaa |
30532733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 30532545 - 30532499
Alignment:
| Q |
294 |
ccttcatatcaatttaatggtcatggaatcattatttgttggaatag |
340 |
Q |
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| T |
30532545 |
ccttcatgtcaatttaatggtcatggaaccgttatttgttcgaatag |
30532499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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