View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17627_high_12 (Length: 379)
Name: NF17627_high_12
Description: NF17627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17627_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 32062623 - 32062271
Alignment:
| Q |
1 |
tcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttctccagtgcattctcttgcttcaatgaccttttctttctaacaaagtcta |
100 |
Q |
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| T |
32062623 |
tcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttctccggtgcattctcttgcttcagtgaccttttctttctaacaaagtcta |
32062524 |
T |
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| Q |
101 |
ttggcttcccaaacatgttgtttatgtcatccattgcttccttcatgttgattgtggggtctactaaaccgtggtgacaagcattttccacctttggttc |
200 |
Q |
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| T |
32062523 |
ttggcttcccaaacatgttgtttatgtcatccattgcttccttcatgttgattgtggggtctactaaaccgtggtgacaagcattttccacctttggttc |
32062424 |
T |
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| Q |
201 |
atccaaaatggcagaaccaacaaatctacgaacaactgtatcttctctgaactttgaattatgagatttttgtgcatccatatccctagatttctcagaa |
300 |
Q |
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| T |
32062423 |
atccaaaatggcagaaccaacaaatctacgaacaactgtatcttctctgaactttgaattatgagatttttgtgcatccatatccctagatttctcagaa |
32062324 |
T |
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| Q |
301 |
ggaacatccttaggtcggggaaaaacaaagccatttacttttgaaactgatga |
353 |
Q |
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| T |
32062323 |
ggaacatccttaggtcggggaaaaacaaagccatttacttttgaaactgatga |
32062271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 32062758 - 32062652
Alignment:
| Q |
1 |
tcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttctccagtgcattctcttgcttcaatgaccttttctttctaacaaagtcta |
100 |
Q |
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|||||||| ||||| || |||||||||| || |||||||||||| |||||| || |||| ||||| ||||||| | | ||||| || | |||||| |||| |
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| T |
32062758 |
tcatcatccgcaagtatcgaaaacccactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatctttttttccgaacaaaatcta |
32062659 |
T |
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| Q |
101 |
ttggctt |
107 |
Q |
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| T |
32062658 |
ttggctt |
32062652 |
T |
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