View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17627_high_15 (Length: 364)
Name: NF17627_high_15
Description: NF17627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17627_high_15 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 21 - 364
Target Start/End: Original strand, 30098899 - 30099242
Alignment:
| Q |
21 |
acatcatcaactgttgcaggtaactannnnnnnngtggttggagacaaatgttagtaaattatgttagtttccggtgtttgaactctcgacttcctagct |
120 |
Q |
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| T |
30098899 |
acatcatcaactgttgcaggtaactattttttttgttgttggagacaaatgttagtaaattatgttagtttccggtgtttgaactctcgacttcctagct |
30098998 |
T |
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| Q |
121 |
agtactcattcggtgtctctgagcttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgctaaagg |
220 |
Q |
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| T |
30098999 |
agtactcattcggtgtctctgagcttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgccaaagg |
30099098 |
T |
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| Q |
221 |
aatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggaccaa |
320 |
Q |
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| T |
30099099 |
aatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggaccaa |
30099198 |
T |
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| Q |
321 |
gctattaacgacggtgttgatgtgatttcaatttcaatgggatt |
364 |
Q |
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| T |
30099199 |
gctattaacgacggtgttgatgtgatttcaatttcaatgggatt |
30099242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 120 - 364
Target Start/End: Complemental strand, 30091914 - 30091671
Alignment:
| Q |
120 |
tagtactcattcggtgtctctgagcttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgctaaag |
219 |
Q |
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| T |
30091914 |
tagtactccttctgtaactctcagcttactaatcgagctgtctgcttcggacttc-aggtaactatgtcaatggaacttcttattttggttatgctaaag |
30091816 |
T |
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| Q |
220 |
gaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggacca |
319 |
Q |
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| T |
30091815 |
gagtagcaagaggcattgcaccaagagctaggcttgctatgtacaaagtcatttgggaagagggtcttttggcttctgatgttttagctggaatggacca |
30091716 |
T |
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| Q |
320 |
agctattaacgacggtgttgatgtgatttcaatttcaatgggatt |
364 |
Q |
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| T |
30091715 |
agctattgctgatggtgttgatgtgatttcaatttctatgggatt |
30091671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 176 - 355
Target Start/End: Complemental strand, 30087879 - 30087700
Alignment:
| Q |
176 |
aggtaactatgttaatggagcttcttattttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgg |
275 |
Q |
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| T |
30087879 |
aggtaactatgtcaacggagcttcttattttggctatgctaaaggagtagcaagaggcattgcaccaaaagctaagattgctatgtacaaagtcatttgg |
30087780 |
T |
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| Q |
276 |
gaagagggtcgtttcgcctctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttc |
355 |
Q |
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| T |
30087779 |
gaagaggatgttatggcttctgatgttttagctggaatggaccaagcaattattgatggtgttgacgtgatttcaatttc |
30087700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 35171551 - 35171429
Alignment:
| Q |
204 |
tttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttt |
303 |
Q |
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| T |
35171551 |
tttggttatgcaaaaggtgtagctagaggtattgcaccaaaagctagaattgcaatgtataaagtactttgggacgaaggtcgtctagcttctgatgttc |
35171452 |
T |
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| Q |
304 |
tagctggcatggaccaagctatt |
326 |
Q |
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| T |
35171451 |
ttgcaggaatggatcaagctatt |
35171429 |
T |
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