View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17627_high_16 (Length: 360)

Name: NF17627_high_16
Description: NF17627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17627_high_16
NF17627_high_16
[»] chr3 (7 HSPs)
chr3 (48-340)||(4655826-4656118)
chr3 (130-270)||(15956968-15957107)
chr3 (198-270)||(15046664-15046735)
chr3 (203-267)||(38278222-38278285)
chr3 (198-246)||(12774921-12774969)
chr3 (199-240)||(3294631-3294671)
chr3 (197-238)||(19429631-19429672)
[»] scaffold0077 (1 HSPs)
scaffold0077 (128-273)||(29630-29774)
[»] chr7 (7 HSPs)
chr7 (128-218)||(16065080-16065170)
chr7 (128-269)||(11775426-11775567)
chr7 (197-239)||(19381839-19381881)
chr7 (198-268)||(26008571-26008640)
chr7 (196-241)||(16206909-16206954)
chr7 (197-241)||(3136000-3136044)
chr7 (196-248)||(18076517-18076569)
[»] chr4 (3 HSPs)
chr4 (196-306)||(20597254-20597363)
chr4 (197-239)||(12348132-12348174)
chr4 (198-270)||(28799424-28799495)
[»] chr1 (3 HSPs)
chr1 (196-280)||(20406647-20406729)
chr1 (200-265)||(22613871-22613935)
chr1 (206-248)||(21417261-21417303)
[»] scaffold2073 (1 HSPs)
scaffold2073 (197-279)||(365-445)
[»] chr5 (3 HSPs)
chr5 (150-269)||(22447265-22447382)
chr5 (196-239)||(18225738-18225781)
chr5 (198-240)||(17362790-17362831)
[»] chr2 (2 HSPs)
chr2 (199-270)||(34898267-34898337)
chr2 (198-270)||(20509792-20509864)
[»] chr8 (1 HSPs)
chr8 (198-248)||(22888656-22888706)
[»] chr6 (3 HSPs)
chr6 (198-248)||(19991712-19991762)
chr6 (196-263)||(15939542-15939609)
chr6 (197-247)||(19978960-19979009)
[»] scaffold0329 (1 HSPs)
scaffold0329 (196-287)||(1589-1679)
[»] scaffold0018 (2 HSPs)
scaffold0018 (199-270)||(53149-53219)
scaffold0018 (199-270)||(57101-57171)
[»] scaffold0008 (1 HSPs)
scaffold0008 (200-246)||(235805-235851)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 48 - 340
Target Start/End: Complemental strand, 4656118 - 4655826
Alignment:
Q  48 aacctgtgcaatgattgattagacttagnnnnnnngttgataatgaattggctttgcaatatgataaaaatgagaccaattgctttgcatttatattggc 147  Q
    ||||| ||||||||| ||| ||||||||       |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  4656118 aacctatgcaatgatggatcagacttagtttttttgttgataatgaattggctttgcaatatgataaaaatgagactgattgctttgcatttatattggc 4656019  T
Q  148 gatgattatgatacatatgtatcttcagatgacgaccgcagtgttgacttggtaccacatgcatatagaagtcctgtctaggcgcattgcataacttgac 247  Q
     |||||||||||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4656018 aatgattatgatacatatgtatcttgaggtgacgacctcggtgttgacttggtaccacatgcatatagaagtcctgtctaggcgcattgcataacttgac 4655919  T
Q  248 agatgccatacttgcttatgtgcattggtgaattatgtgaattagttgaatatgtgcatcagttaacttggtgaattgtgttcttgatgatgt 340  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4655918 aggtgtcatacttgcttatgtgcattggtgaattatgtgaattagttgaatatgtgcatcagttaacttggtgaattgtgtacttgatgatgt 4655826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 270
Target Start/End: Complemental strand, 15957107 - 15956968
Alignment:
Q  130 ctttgcatttatattggcgatgatt-atgatacatatgtatcttcagatgacgaccgcagtgttgacttggtaccacatgcatatagaagtcctgtctag 228  Q
    ||||| ||| |||| ||||| |||| |||||||| ||||||||| || ||| ||||   |||| || || |||||||||||||||||| ||| |||||||    
T  15957107 ctttgtattcatataggcgacgattgatgatacaaatgtatcttgaggtgatgaccttggtgtcga-ttagtaccacatgcatataga-gtcgtgtctag 15957010  T
Q  229 gcgcattgcataacttgacagatgccatacttgcttatgtgc 270  Q
    ||||||||||||||||||||| || ||| |||||||||||||    
T  15957009 gcgcattgcataacttgacaggtgtcattcttgcttatgtgc 15956968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 15046664 - 15046735
Alignment:
Q  198 ggtaccacatgcatatagaagtcctgtctaggcgcattgcataacttgacagatgccatacttgcttatgtgc 270  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||||| |||  || |||||||||||||||||    
T  15046664 ggtaccacatgcatataga-gttgtgtctaggcgcattgcataacttaacaagtgtcatacttgcttatgtgc 15046735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 38278222 - 38278285
Alignment:
Q  203 cacatgcatatagaagtcctgtctaggcgcattgcataacttgacagatgccatacttgcttatg 267  Q
    |||||||||| ||| ||| |||||||||||||||||||||||||||  || ||||||||||||||    
T  38278222 cacatgcatagaga-gtcgtgtctaggcgcattgcataacttgacatgtgtcatacttgcttatg 38278285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 12774921 - 12774969
Alignment:
Q  198 ggtaccacatgcatatagaagtcctgtctaggcgcattgcataacttga 246  Q
    ||||||||||||||||||||||| ||| || |||||||||||| |||||    
T  12774921 ggtaccacatgcatatagaagtcgtgtttaagcgcattgcatatcttga 12774969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 3294631 - 3294671
Alignment:
Q  199 gtaccacatgcatatagaagtcctgtctaggcgcattgcata 240  Q
    |||||||||||||||||| ||| |||||||||||||||||||    
T  3294631 gtaccacatgcatataga-gtcgtgtctaggcgcattgcata 3294671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 19429672 - 19429631
Alignment:
Q  197 tggtaccacatgcatatagaagtcctgtctaggcgcattgca 238  Q
    ||||||| ||||||||||| |||| |||||||||||||||||    
T  19429672 tggtaccgcatgcatataggagtcatgtctaggcgcattgca 19429631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 128 - 273
Target Start/End: Original strand, 29630 - 29774
Alignment:
Q  128 tgctttgcatttatattggcgatgattatgatacatatgtatcttcagatgacgaccgcagtgttgacttggtaccacatgcatatagaagtcctgtcta 227  Q
    |||||| |||| |||||||||| |||||||||||| ||||||||| || |||||||| | |||||||||| ||||||| ||||||||| |||| ||||||    
T  29630 tgcttttcattcatattggcgacgattatgatacagatgtatcttgaggtgacgacctcggtgttgacttcgtaccacgtgcatatag-agtcgtgtcta 29728  T
Q  228 ggcgcattgcataacttgacagatgccatacttgcttatgtgcatt 273  Q
     ||||||||||||||||||||| || ||||||||||||||||||||    
T  29729 tgcgcattgcataacttgacaggtgtcatacttgcttatgtgcatt 29774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 16065170 - 16065080
Alignment:
Q  128 tgctttgcatttatattggcgatgattatgatacatatgtatcttcagatgacgaccgcagtgttgacttggtaccacatgcatatagaag 218  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| || |||| ||| | |||||||||||||||||||||||| ||||||    
T  16065170 tgctttgcattcatattggctatgattatgatacatatgtatcttgaggtgacaacctcggtgttgacttggtaccacatgcatctagaag 16065080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 128 - 269
Target Start/End: Original strand, 11775426 - 11775567
Alignment:
Q  128 tgctttgcatttatattggcgatgatt-atgatacatatgtatcttcagatgacgaccgcagtgttgacttggtaccacatgcatatagaagtcctgtc- 225  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||| || ||||||||   ||| |||| |||| |||||||||||||| |||   |||     
T  11775426 tgctttgcattcatattggcgatgattaatgatacatatgtatcttgaggtgacgaccttggtgatgac-tggtcccacatgcatatag-agttgggtca 11775523  T
Q  226 taggcgcattgcataacttgacagatgccatacttgcttatgtg 269  Q
    ||||| |||||||||||||||||| || |||||||| |||||||    
T  11775524 taggcacattgcataacttgacaggtgtcatacttgattatgtg 11775567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 19381881 - 19381839
Alignment:
Q  197 tggtaccacatgcatatagaagtcctgtctaggcgcattgcat 239  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  19381881 tggtaccacatgcatataaaagtcctgtctaggcgcattgcat 19381839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 268
Target Start/End: Original strand, 26008571 - 26008640
Alignment:
Q  198 ggtaccacatgcatatagaagtcctgtct-aggcgcattgcataacttgacagatgccatacttgcttatgt 268  Q
    ||||||||||||||||| | ||| ||||| ||||||||||||||| ||||||| || |||||||||||||||    
T  26008571 ggtaccacatgcatatata-gtcgtgtcttaggcgcattgcataa-ttgacaggtgtcatacttgcttatgt 26008640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 16206954 - 16206909
Alignment:
Q  196 ttggtaccacatgcatatagaagtcctgtctaggcgcattgcataa 241  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||    
T  16206954 ttggtaccacatgcatattggtgtcgtgtctaggcgcattgcataa 16206909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 3136044 - 3136000
Alignment:
Q  197 tggtaccacatgcatatagaagtcctgtctaggcgcattgcataa 241  Q
    |||||||||| |||| |||||||| ||||||||||||| ||||||    
T  3136044 tggtaccacaagcatgtagaagtcgtgtctaggcgcatagcataa 3136000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 18076569 - 18076517
Alignment:
Q  196 ttggtaccacatgcatatagaagtcctgtctaggcgcattgcataacttgaca 248  Q
    |||||||||||||||||||| ||||  ||||| || |||||||||| ||||||    
T  18076569 ttggtaccacatgcatataggagtcgcgtctacgcacattgcataatttgaca 18076517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 20597254 - 20597363
Alignment:
Q  196 ttggtaccacatgcatatagaagtcctgtctaggcgcattgcataacttgacagatgccatacttgcttatgtgcattggtgaattatgtgaattagttg 295  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||| | ||||||   | |||| || ||||||| | ||||||||| ||||||||||||||    
T  20597254 ttggtacgacatgcatatagaagtcgtgtataggcgcattgcatgatttgacatgagtcataatttcttatgtac-ttggtgaatcatgtgaattagttg 20597352  T
Q  296 aatatgtgcat 306  Q
    |||||||||||    
T  20597353 aatatgtgcat 20597363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 12348132 - 12348174
Alignment:
Q  197 tggtaccacatgcatatagaagtcctgtctaggcgcattgcat 239  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||    
T  12348132 tggtaccacatacatataggagtcgtgtctaggcgcattgcat 12348174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 270
Target Start/End: Complemental strand, 28799495 - 28799424
Alignment:
Q  198 ggtaccacatgcatatagaagtcctgtctaggcgcattgcataacttgacagatgccatacttgcttatgtgc 270  Q
    |||| |||||||||||| ||||| ||| |||| ||||||||||| |||||| ||| |||| ||| ||||||||    
T  28799495 ggtagcacatgcatatataagtcgtgtttaggtgcattgcataatttgacaaatgtcataattg-ttatgtgc 28799424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 196 - 280
Target Start/End: Complemental strand, 20406729 - 20406647
Alignment:
Q  196 ttggtaccacatgcatatagaagtcctgtctaggcgcattgcataacttgacagatgccatacttgcttatgtgcattggtgaat 280  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| || | ||||||||| ||||| |||||||||    
T  20406729 ttggtaccacatgcatataga-gtcctgtctaggcgcattccataacttgacaggtgtcgtacttgcttgtgtgc-ttggtgaat 20406647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 22613935 - 22613871
Alignment:
Q  200 taccacatgcatatagaagtcctgtctaggcgcattgcataacttgacagatgccatacttgctta 265  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||||||||| || | ||||||||||    
T  22613935 taccacatgaatataga-gtcgtgtctaggcgcattgcataacttgacaggtgtcgtacttgctta 22613871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 21417303 - 21417261
Alignment:
Q  206 atgcatatagaagtcctgtctaggcgcattgcataacttgaca 248  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||    
T  21417303 atgcatatagaagtcgtgtttaggcgcattgcatatcttgaca 21417261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2073 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold2073
Description:

Target: scaffold2073; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 445 - 365
Alignment:
Q  197 tggtaccacatgcatatagaagtcctgtctaggcgcattgcataacttgacagatgccatacttgcttatgtgcattggtgaa 279  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||| || ||||| | ||||||||| ||||||||    
T  445 tggtaccacatgcatataga-gtcgtgtctaggcgcattgcataacttgacaggtgtcataccttcttatgtgc-ttggtgaa 365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 150 - 269
Target Start/End: Complemental strand, 22447382 - 22447265
Alignment:
Q  150 tgattatgatacatatgtatcttcagatgacgaccgcagtgttgacttggtaccacatgcatatagaagtcctgtctaggcgcattgcataacttgacag 249  Q
    ||||||||||||| ||||||||| |||||||||||     | ||| |||||||||||||||||||||  || ||||||||| ||||||| |||||||||     
T  22447382 tgattatgatacagatgtatcttgagatgacgaccttgacggtga-ttggtaccacatgcatatagac-tcgtgtctaggcacattgcaaaacttgacaa 22447285  T
Q  250 atgccatacttgcttatgtg 269  Q
     || ||||||||||||||||    
T  22447284 gtgtcatacttgcttatgtg 22447265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 18225738 - 18225781
Alignment:
Q  196 ttggtaccacatgcatatagaagtcctgtctaggcgcattgcat 239  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  18225738 ttggtaccacatgcatatagaagtcgtgtctaggcgcattgcat 18225781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 17362831 - 17362790
Alignment:
Q  198 ggtaccacatgcatatagaagtcctgtctaggcgcattgcata 240  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  17362831 ggtaccacatgcatataga-gtcgtgtctaggcgcattgcata 17362790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 34898267 - 34898337
Alignment:
Q  199 gtaccacatgcatatagaagtcctgtctaggcgcattgcataacttgacagatgccatacttgcttatgtgc 270  Q
    |||||||||||||||||| ||| ||||||| || ||||||||||||||||| || |||||||||||| ||||    
T  34898267 gtaccacatgcatataga-gtcatgtctagacgtattgcataacttgacaggtgtcatacttgcttacgtgc 34898337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 270
Target Start/End: Complemental strand, 20509864 - 20509792
Alignment:
Q  198 ggtaccaca-tgcatatagaagtcctgtctaggcgcattgcataacttgacagatgccatacttgcttatgtgc 270  Q
    ||||||||| |||||||||| ||| |||||||||||||||||||||||||||| ||  ||| ||||||||||||    
T  20509864 ggtaccacaatgcatataga-gtcgtgtctaggcgcattgcataacttgacaggtgttataattgcttatgtgc 20509792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 22888706 - 22888656
Alignment:
Q  198 ggtaccacatgcatatagaagtcctgtctaggcgcattgcataacttgaca 248  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  22888706 ggtaccacatgcatatagaagtcgagtctaggggcattgcataacttgaca 22888656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 19991712 - 19991762
Alignment:
Q  198 ggtaccacatgcatatagaagtcctgtctaggcgcattgcataacttgaca 248  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  19991712 ggtaccacatgcatatagaagtcgtgtttaggcgcatttcataacttgaca 19991762  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 15939542 - 15939609
Alignment:
Q  196 ttggtaccacatgcatatagaagtcctgtctaggcgcattgcataacttgacagatgccatacttgct 263  Q
    |||||||||||||||||||| |||| ||||||||||||||||| || || |||  || ||||||||||    
T  15939542 ttggtaccacatgcatataggagtcgtgtctaggcgcattgcaaaatttaacatgtgtcatacttgct 15939609  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 19979009 - 19978960
Alignment:
Q  197 tggtaccacatgcatatagaagtcctgtctaggcgcattgcataacttgac 247  Q
    |||||||||||||||||||  ||| ||||||| ||||||||||||||||||    
T  19979009 tggtaccacatgcatatagt-gtcgtgtctagacgcattgcataacttgac 19978960  T

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Target: scaffold0329 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 1679 - 1589
Alignment:
Q  196 ttggtaccacatgcatatagaagtcctgtctaggcgcattgcataacttgacagatgccatacttgcttatgtgcattggtgaattatgtga 287  Q
    |||||||||||||||||||  |||| |||||||||||||||||| | ||||||   | |||| |||||||||||| ||||||| | ||||||    
T  1679 ttggtaccacatgcatataatagtcgtgtctaggcgcattgcatgatttgacatgagtcataattgcttatgtgc-ttggtgattgatgtga 1589  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 53219 - 53149
Alignment:
Q  199 gtaccacatgcatatagaagtcctgtctaggcgcattgcataacttgacagatgccatacttgcttatgtgc 270  Q
    ||||| |||||||||||| ||  ||| ||||||||||||||| |||||||  || |||||||||||||||||    
T  53219 gtaccgcatgcatataga-gttgtgtttaggcgcattgcatagcttgacatgtgtcatacttgcttatgtgc 53149  T

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Target: scaffold0018; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 57171 - 57101
Alignment:
Q  199 gtaccacatgcatatagaagtcctgtctaggcgcattgcataacttgacagatgccatacttgcttatgtgc 270  Q
    ||||| |||||||||||| ||  ||| ||||||||||||||| |||||||  || |||||||||||||||||    
T  57171 gtaccgcatgcatataga-gttgtgtttaggcgcattgcatagcttgacatgtgtcatacttgcttatgtgc 57101  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 235851 - 235805
Alignment:
Q  200 taccacatgcatatagaagtcctgtctaggcgcattgcataacttga 246  Q
    ||||||||||||||||||||| ||| |||||||||| ||||| ||||    
T  235851 taccacatgcatatagaagtcgtgtttaggcgcatttcataatttga 235805  T

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