View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17627_high_1_N (Length: 479)
Name: NF17627_high_1_N
Description: NF17627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17627_high_1_N |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 24 - 479
Target Start/End: Original strand, 20648763 - 20649218
Alignment:
| Q |
24 |
gacatcatcaggagcagtatactcgggaacatgatcagtatacaaaacttcaatgctcttattgaagcgtttaataccatatctcataaagatgtaacca |
123 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||| ||| | | ||||||||||||| |
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| T |
20648763 |
gacatcatcaggagcagtatactccggaacatgatcagtatacaaaactttcatgctcctattgaagggtttaatttcatctaccccaaagatgtaacca |
20648862 |
T |
|
| Q |
124 |
tcatcgatatcccaattgcgaaacataccagtatcaaatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20648863 |
tcatcgatatcccaattgcgaaacataccagtatcatatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat |
20648962 |
T |
|
| Q |
224 |
tataaatgtaaacaacatttgcatcctggccaactaaagcaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc |
323 |
Q |
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|||||||||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20648963 |
tataaatgtaaacaacttttgtatcgtggccaactaaaggaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc |
20649062 |
T |
|
| Q |
324 |
attcacaaatgcatatgcatcagaatcatttgatgatggagtgaaagtaagttccaaactatttccttttacatgcacaatgaattctttcattaaatat |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20649063 |
attcacaaatgcatatgcatcagaatcatttgatgatggagtgaaagtaagttccaaactatttccttttacatgcacaatgaattctttcattaaatat |
20649162 |
T |
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| Q |
424 |
gctatgttaaagtaatctacatttagagaaacactaaagttatgcagaagagtgaa |
479 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20649163 |
gctaagttaaagtaatctacatttagagaaacactaaagttatgcagaagagtgaa |
20649218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 24 - 479
Target Start/End: Original strand, 20632667 - 20633119
Alignment:
| Q |
24 |
gacatcatcaggagcagtatactcgggaacatgatcagtatacaaaacttcaatgctcttattgaagcgtttaataccatatctcataaagatgtaacca |
123 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||| | |||||| | ||||||||||||| |
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| T |
20632667 |
gacatcatcaggagcagtatactccggaacatgatcagtatacaaaactttcatgctcttattgaagtgtttaaaatcatatcccccaaagatgtaacca |
20632766 |
T |
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| Q |
124 |
tcatcgatatcccaattgcgaaacataccagtatcaaatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20632767 |
tcatcgatatcccaattgcgaaacataccagtatcatatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat |
20632866 |
T |
|
| Q |
224 |
tataaatgtaaacaacatttgcatcctggccaactaaagcaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc |
323 |
Q |
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||||||||||||||| ||| ||| |||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20632867 |
tataaatgtaaacaa---ttgtatcgtggccagcgaaaggaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc |
20632963 |
T |
|
| Q |
324 |
attcacaaatgcatatgcatcagaatcatttgatgatggagtgaaagtaagttccaaactatttccttttacatgcacaatgaattctttcattaaatat |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20632964 |
attcacaaatgcatatgcatcagaatcatttgatgatggagtgaaagtaagttccaaactatttccttttacatgcacaatgaattctttcattaaatat |
20633063 |
T |
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| Q |
424 |
gctatgttaaagtaatctacatttagagaaacactaaagttatgcagaagagtgaa |
479 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20633064 |
gctaagttaaagtaatctacatttagagaaacactaaagttatgcagaagagtgaa |
20633119 |
T |
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